Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0054 ATGGTTAAGCACGTATCCATGGCTTCGCTCAAGCTTGTGCTGCTGTTGTTCATTCTCAGCTTCTTCAACTTGAACACTTGCAAAGCACAGGAACAGAACACCGACCCTGTCTATCTGTACCATAATTGCTCAGGCGGCAACACCACCGCCAACAGTGCCTACCAACTAAACGTCGGCACCCTCTTCAGTTCCCTATCTTCAAAATCCATAGAATTCTCAAACGACACCGTCGGAACATCCTCCTCCGACAGGGTGTACGGACTGTTCATGTGCAGAGGAGACGTGCCCACAGCGCTGTGTCAACAGTGCGTGTTGAACGCAACGCGACGTCTCCGCTCAGAGTGCTCTCTGGCCAAACAGGCCGTGATATGGTACGACGAGTGCACTGTTCGCTACTCCAACCGCTCTTTCTTCTCCACGGTGGCCGTTCGGCCGCGTCTCGGACTCCTCAACACTGCCAACATATCCAACCAAGAATCCTTCATGAAACTGCTTTTCTCAACCATAAACACAACCGCGGATGAGGCTGCCAACTTTTCCGTGGGATTGAAGAAATACGCGACCAAGCAGGCCAACATTTCTGGGTTTCAGTCACTATACTGTTTGGCTCAGTGCACACCCGATCTGTCCCCGCAAGACTGCAGAAGCTGTCTCAGTGGTGTGATTGGAGACCTTCCTTGGTGCTGTCAGGGAAAGCAGGGAGGAAGGGTTCTCTATCCTAGCTGCAACGTTAGGTACGAACTCTATCCTTTCTACCGACAAGTCACACCCGCGCCTCCACCCTCATCGCCCCTACTTCCTCCTCCAGCTTCCGCTAATTCCCAAGGAGGCGGTGGGATCTCAACTGGGACCATTGTTGCGATTGTGGTTCCAATTACGGTAGCCGTGCTTCTCTTTATAGTGGGAATTTGTTTCTTGAGTAGAAGAGCTAGAAAGAAGGAGGGTTCTCTAAAGGAAGGAAAAAATGTAGATGACATCACCACTGTGGAATCCTTGCAATTCAGCTTTGGCACGATTTCAGCGGCCACAAACAATTTCTCTGCGGAAAACAAGCTGGGGGAGGGTGGATTTGGTGAGGTTTTCAAGGGTGCTCTTCCGACTGGACAAGAAATAGCTGTCAAGAGACTCTCCAAAAGTTCTGGGCAAGGTGGAGAAGAATTTAAGAATGAAGTGGTGGTGGTTGCCAAGCTCCAACATAGAAATTTAGTGAGGCTTCTCGGGTTTTGCTTGCAAGGAGAAGAGAAGATACTTGTTTATGAATATGTTCCCAACAAAAGTCTCGATTACACTCTCTTCGACCCTGAAAAGCAAAGGGAGTTGGATTGGAAGAGACGTTACAAGATCATTGAAGGGACTGCTCGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACATCGAGATCTTAAAGCAAGTAACATATTGTTAGATAGCGATTTGAGTCCAAAAATCTCAGATTTTGGCATGGCAAGAATAGTTGGAGTTGATCAAACTCAAGGAAACACGGACAGAATTGTAGGAACCTATGGATATATGGCTCCAGAATATGCAATGCATGGAGAGTTCTCTGTTAAATCTGACGTGTACAGTTTTGGAGTCCTCCTTATGGAGATTATAAGCGGCAAGAAAAATAGCTCTTTCTATCAAACAGATGGTGCTGAGGATCTATTGAGCTATGCGTGGCTACTTTGGAAGGATGGAACACCTTTGGAACTGATGGACCCCATATTAAGAGAATCCTACAATCAGAATGAAATCATCAGAACCATCCATATTGGTCTGCTGTGTGTCCAAGAAGATCCTGAAGACAGACCTACAATGGCAACAATAGTTCTTATGCTAGATAGTAGCACTGTTACTCTACCAACTCCTAAGCGGCCTGCATTTTTCATCCACAGTGGAACTGATACATACATGCCAAAAGGGCAGCAATTTGATCAGTCTATAACAAAATCATTACCAGTGTCTATCAATGAGGTTTCCATTAGCGAAATGGATCCTAGATAA 2016 0.4633 MVKHVSMASLKLVLLLFILSFFNLNTCKAQEQNTDPVYLYHNCSGGNTTANSAYQLNVGTLFSSLSSKSIEFSNDTVGTSSSDRVYGLFMCRGDVPTALCQQCVLNATRRLRSECSLAKQAVIWYDECTVRYSNRSFFSTVAVRPRLGLLNTANISNQESFMKLLFSTINTTADEAANFSVGLKKYATKQANISGFQSLYCLAQCTPDLSPQDCRSCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRQVTPAPPPSSPLLPPPASANSQGGGGISTGTIVAIVVPITVAVLLFIVGICFLSRRARKKEGSLKEGKNVDDITTVESLQFSFGTISAATNNFSAENKLGEGGFGEVFKGALPTGQEIAVKRLSKSSGQGGEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYTLFDPEKQRELDWKRRYKIIEGTARGIQYLHEDSRLRIIHRDLKASNILLDSDLSPKISDFGMARIVGVDQTQGNTDRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLLMEIISGKKNSSFYQTDGAEDLLSYAWLLWKDGTPLELMDPILRESYNQNEIIRTIHIGLLCVQEDPEDRPTMATIVLMLDSSTVTLPTPKRPAFFIHSGTDTYMPKGQQFDQSITKSLPVSINEVSISEMDPR* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0054 671 ProSiteProfiles Gnk2-homologous domain profile. 36 137 IPR002902 -
Vra11g0054 671 ProSiteProfiles Gnk2-homologous domain profile. 143 251 IPR002902 -
Vra11g0054 671 CDD STKc_IRAK 352 618 - -
Vra11g0054 671 Gene3D - 35 137 IPR038408 -
Vra11g0054 671 Gene3D - 147 251 IPR038408 -
Vra11g0054 671 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 669 - -
Vra11g0054 671 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 13 669 - -
Vra11g0054 671 ProSiteProfiles Protein kinase domain profile. 346 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0054 671 SUPERFAMILY Protein kinase-like (PK-like) 331 640 IPR011009 -
Vra11g0054 671 Pfam Salt stress response/antifungal 155 249 IPR002902 -
Vra11g0054 671 Pfam Salt stress response/antifungal 43 134 IPR002902 -
Vra11g0054 671 Gene3D Transferase(Phosphotransferase) domain 1 422 625 - -
Vra11g0054 671 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vra11g0054 671 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Vra11g0054 671 Pfam Protein tyrosine and serine/threonine kinase 348 615 IPR001245 GO:0004672|GO:0006468
Vra11g0054 671 SMART serkin_6 346 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0054 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0054 Vra-Chr11 409304 412506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0054 34 671 Receptor kinase-like Gene Family AT4G05200 55.927 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra11g0054 PK_Tyr_Ser-Thr 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0054 - - vun:114173511 1183.7