Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0051 ATGATGAAGAAAAAGTGCAGTTCAGGTCGGCAAAGGATTCCGATTGAGAAAATACCAAAAAAAAGTCACTTACAAGTAACATTTTCGAAGCGTCGTTCGGGACTCTTCAAAAAAGCCAGTGAGCTCTGCACACTCTGTGGAGTAGAAATCGCAATCATCGTTTTCTCTCCCGCGGACAAGGCCTTCTCGTTCGGCCACCCGCAAGTTGAATCCGTCGTTGATTCTTACGTAACTTCAAACTCATCACCAGAGTATAATCGCAGTGGTAATGGTCACCAACTCGTTGAGGCTCATCGCAGTGCTAATATTCGTAATCTCAACGCGCAACTCACTCAGATTGTTAACGAGCTAGAGATAGAGAAAAGGCGAGGAGAAGAGCTAGATCGAGCGTGGAAAACGAGACTGAGCCAATTCTGGTGGGAGATCCCCCTTAACGAACTTGGATTGCAAGAGTTACAGCATTTGATGTTTTCGTTGCATGAACTGAAAAATACTATTGCAAAATATGCTACCCAAATAATTTCCATGGACCAAACTACTATTGGGCCAACAGTCATAGAATCCGGGTCCAATGGATTTATCCCCGAGCCTTACTATATTTTCGACACCAAACATACTAATGCTGAGATTTATGGTAATACACTCAGTCTGAGTTTTCCATATTAA 666 0.4294 MMKKKCSSGRQRIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPQVESVVDSYVTSNSSPEYNRSGNGHQLVEAHRSANIRNLNAQLTQIVNELEIEKRRGEELDRAWKTRLSQFWWEIPLNELGLQELQHLMFSLHELKNTIAKYATQIISMDQTTIGPTVIESGSNGFIPEPYYIFDTKHTNAEIYGNTLSLSFPY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0051 221 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 177 - -
Vra11g0051 221 Gene3D - 90 180 - -
Vra11g0051 221 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Vra11g0051 221 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Vra11g0051 221 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vra11g0051 221 Coils Coil 100 127 - -
Vra11g0051 221 PANTHER MADS BOX PROTEIN 7 177 - -
Vra11g0051 221 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vra11g0051 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vra11g0051 221 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vra11g0051 221 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vra11g0051 221 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0051 Vra-Chr11 398022 398844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0051 1 210 Type I MADS-box Gene Family AT5G60440 43.602 1.15e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra11g0051 SRF-TF 2.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0051 - - gmx:100793705 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0051 11 398022 398844 Vra11g0051 11 398022 398844 ECH
Vra11g0051 11 398022 398844 Vra8g2370 8 41887622 41888540 PCT