Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0040 ATGAGGGGCGGAGAGGAGAGACAGACGGCGACCGGGATTCGGAAGAAGGGAAGCGGAGTGAGGCAATGGCTGATGCTCGACGGAAAAGGGGAGACGGAGGTGGTGGAGGCCGGCAAGCACGCCATCATGAGGCGCACCGGCCTCCCCGCCCGTGACCTCCGCATATTGGACCCTCTCCTTTCCTACCCTTCCACCCTTCTTGGCCGTGAGAGGGCCATCGTCATCAACTTGGAGCACATCAAGGCCATCATCACCGCCCACGAGGTCCTCCTCCTCAACTCACGCGACCCCTCCGTCACCCCCTTCGTCCAAGAGCTCCAGGCCAGGATCCTCCGCCACCACCAGGCCTGTTCCAAACACCACGACCACCACACCGACTCCGACCCCGATCATGACCACGACCCCGATGCCATCAAGATTCTCCCTTTCGAGTTCGTGGCCCTGGAGGCCTGCCTTGAAGCCGCCTGTAGCGTATTGGAGAACGAGGCAAAGACGTTGGAGCAGGAGGCTCATCCCGCCTTGGACAAGCTCACATCCAAGATCAGTACTCTCAATTTGGAACGCGTTCGTCAAATTAAGAGCCGATTAGTCGCCATCACTGGCCGTGTTCAAAAGGTGAGGGATGAATTGGAGCACTTGCTGGACGACGACGATGATATGGCTGAGATGTATCTGACGGAAAAGTTAGCCGAGCAGCAGATGGAAGAGAGCTCTTCCGCATCCTCCATAAATGACCACGACCAGCAGGATATAGATGACAGGACCACTACAGAAATATCCTTTGAGGCTGTGACCCCCCCGGTGGGCTTCGAGGATCAACACAATGCCTACAATGTTCTTGGAAGGGACAGCCATGGAACCCGTGGTAGCACTTACAGTGCCGTCACCAAGCAGCTTGATGTCGAGGAGCTTGAAATGCTTTTGGAGGCTTACTTTGTGCAGATCGATGGCACCTTGAACAAGCTCTCAACGCTGAGGGAATATGTTGATGACACGGAGGATTACATCAACATCATGCTGGATGACAAACAGAACCATCTCCTCCAAATGGGAGTCATGTTGACCACAGCAACTCTGGTAGTGAGTGCCTTTGTTGTTGTGGCCGGAGTTTTTGGCATGAATATTCACATTGAGCTATTTGATCCAGATAAAGCCGGGATGACAGAGTTCCTCTGGACTGTTGGTGGTAGCACTGCAGGGACCATATTCTTGTATGTAGTTGCCATTGCCTGGTGTAAGCAGAAACGCTTGCTGGAGTAA 1260 0.5421 MRGGEERQTATGIRKKGSGVRQWLMLDGKGETEVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTLLGRERAIVINLEHIKAIITAHEVLLLNSRDPSVTPFVQELQARILRHHQACSKHHDHHTDSDPDHDHDPDAIKILPFEFVALEACLEAACSVLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDDDMAEMYLTEKLAEQQMEESSSASSINDHDQQDIDDRTTTEISFEAVTPPVGFEDQHNAYNVLGRDSHGTRGSTYSAVTKQLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGVFGMNIHIELFDPDKAGMTEFLWTVGGSTAGTIFLYVVAIAWCKQKRLLE* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0040 419 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 134 418 IPR039204 -
Vra11g0040 419 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 11 120 IPR039204 -
Vra11g0040 419 Coils Coil 149 169 - -
Vra11g0040 419 CDD Mrs2_Mfm1p-like 23 417 IPR039204 -
Vra11g0040 419 Gene3D - 9 94 - -
Vra11g0040 419 Gene3D Magnesium transport protein CorA, transmembrane region 97 347 - -
Vra11g0040 419 PANTHER - 134 418 - -
Vra11g0040 419 PANTHER - 11 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0040 Vra-Chr11 320452 323935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0040 23 419 MRS2 Gene Family AT3G19640 65.909 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0040 - - gmx:100819578 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0040 11 320452 323935 Vra11g0040 11 320452 323935 ECH