Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0030 ATGGAGCCTATTGAGGAGATCTCCCAAGAATGGATGAGTTGTCTCAGTGAAGTGTACACAGATGAGGAAGCTGACTTCATGAACCAGCTGCTTGGTAACTGCTCAATCCCAGAACAGTTATATGAAAGTTTGGACATGGAAACAAAAGCTCCAAATGCAGATTCTATCTTGTTTTTACAAGGGAGTGGGCCCTGTGCTCATGCTACCAAATATATCTTTCCCACAACAAATGCTGCCAACTGCTCCAACAATTTGGGCCACGTGTCCGTTGGTTTTTCCTTCCAAGAGTTGGGTCTTGACTCAGGGAGAGAGAATCTTGCTGACATGGATTTGCAGGATCACAATGCAGAAAAGGATAATACCAGAAGCATGGAGAAATCAGAAAAAAGGTTCAGGAGCTCATTTGAGGGCACAGAGAACAAGAGGAATGTGAAATCTAAGAAGAATCCAAAACCAGCTTCTTTAAGGAACACTGAAGAGGAAGCAAGTCCTGACCCTCAGAGTCAGACCTCAAACAGTAGCTGTTCAGATGATGACTCCAAAGATTCTAGAGCGCTTAAGTTAAGTAGAAAATCAAGATCTAATAGAGACCCTGCAACTGATCCACAGAGCGCGTATGCAAGAAAGAGAAGAGAAAGAATAAACGAAAGACTGAGAATTCTACAGAGCCTAGTTCCAAATGGAACTAAGGTGGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTGAGCTCTGATGATCTGTGGATGTACGCTCCTATTGCTTACAATGGAATGAACATTGGCCTGGAACTTAACATCAACATCACAAAACAAGAAAAAAAATGCATATCGTAG 870 0.4184 MEPIEEISQEWMSCLSEVYTDEEADFMNQLLGNCSIPEQLYESLDMETKAPNADSILFLQGSGPCAHATKYIFPTTNAANCSNNLGHVSVGFSFQELGLDSGRENLADMDLQDHNAEKDNTRSMEKSEKRFRSSFEGTENKRNVKSKKNPKPASLRNTEEEASPDPQSQTSNSSCSDDDSKDSRALKLSRKSRSNRDPATDPQSAYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLELNINITKQEKKCIS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0030 289 Gene3D - 200 256 IPR036638 GO:0046983
Vra11g0030 289 MobiDBLite consensus disorder prediction 160 176 - -
Vra11g0030 289 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 94 281 - -
Vra11g0030 289 CDD bHLH_AtIND_like 199 261 - -
Vra11g0030 289 MobiDBLite consensus disorder prediction 110 211 - -
Vra11g0030 289 MobiDBLite consensus disorder prediction 177 211 - -
Vra11g0030 289 Pfam Helix-loop-helix DNA-binding domain 208 248 IPR011598 GO:0046983
Vra11g0030 289 SMART finulus 204 253 IPR011598 GO:0046983
Vra11g0030 289 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 281 - -
Vra11g0030 289 MobiDBLite consensus disorder prediction 110 146 - -
Vra11g0030 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Vra11g0030 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 264 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0030 Vra-Chr11 254834 258011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0030 146 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 61.905 6.07e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra11g0030 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0030 - - var:108319891 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0030 11 254834 258011 Vra11g0030 11 254834 258011 ECH
Vra11g0030 11 254834 258011 Vra8g2395 8 42140870 42142503 PCT