Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0014 ATGTCCACCATGAACTTCTTCCTATCTGCTTTATTGCTTCACTCTTTCATGGCTACTGTGTTGGGAAAAGAAGCATCGCATATTATCATGCACAATGGCGGAGGCTATCCTTATGCTTCTCCCCCTCCTCCGATGTGTCCCCCGCCTCCACCCCCACCTCCTCCCCCGAAGTGTCAGACAAGGTTGGAGAATGGCCGCCGAACTCTGGTGGGCTTCACTGGTTCAGTGGACCGAAACAAATACATCGGTGACTGGAGGGGTGATGACCCTTGCAAATTCAACGGGATACGATGTGCAGAATATCCAGACCCGGAAAAGCAGCGAGCAATTGCGGGAATAGACCTGAACGGAGCTGGGCTGTCTGGGAAAAACCGCACACCTCTGCTCCTGTCGGGGCTCTTGGACAAGATACCAGAGCTGACGTTCTTCCACGTGAACTCCAACAACTTCACCGGTGCCATCCCAAGTGAAATAACCCAGTACAAATATTTCTTCGAGTTGGACCTAAGTAACAACAAGCTGAAGGGCGAGTTTCCAAAGGAAGTTCTCCAGTCCTCGCAGCTGGTTTTCCTTGACCTCAGGTTCAACCTTCTCTACGGCCCCATACCTCCGCAGCTCTTCTACCTCAAATATCTCGATGTCATTTTCATCAACAACAATCAATTCACTGGCAGTCTCCCCGATGCCTTTGCCTCCACCCCGGCAAGGTACCTCACTTTTGCCAACAACCAACTCACCGGTCCAATCCCCCCCTCCGTCGGAGCTTCCAAAAACCTCGTCGAAGTCCTCTTCTTGGGCAACCACTTCCAGGGATGCTTGCCCTACCAGATTGGCCTCCTCCGCAAGGCCACCGTCTTTGACGTCAGCAAAAACAATTTGACCGGTCCCATCCCACGCTCCTTCGGCTGCCTGGAGAGCATCCGGTACCTCAACTTGGAGTGCAACCAGTTCTACGGTGAAGTTCCGGAAACGGTGTGTCAGCTCCCAGGGCTCCGCGACAGAGGCAACTTCTCATTATCGAACAACTATTTCACTCAGGTTGGCCCTGCATGCAGGAAGCTGATCGAGTGCAATGTGCTGGACGTGAGCAACAACTGCATCCTTGGCCTTCCCAATCAAAGGCCCCATGGCGAATGCTCCCACTTCTTCTCCAACCTCAAGCCCTGCCCCAATCCAAAGTCTCTCAATTACGTACCCTGCAAAAAGTACGATCCCAGCAGCCACACCCACACCACCACCTCCACTCCTCCTGCTCCTCTCTCTTACAACTCTCTCGATCCCCGTCTTCATCGCTAG 1296 0.5316 MSTMNFFLSALLLHSFMATVLGKEASHIIMHNGGGYPYASPPPPMCPPPPPPPPPPKCQTRLENGRRTLVGFTGSVDRNKYIGDWRGDDPCKFNGIRCAEYPDPEKQRAIAGIDLNGAGLSGKNRTPLLLSGLLDKIPELTFFHVNSNNFTGAIPSEITQYKYFFELDLSNNKLKGEFPKEVLQSSQLVFLDLRFNLLYGPIPPQLFYLKYLDVIFINNNQFTGSLPDAFASTPARYLTFANNQLTGPIPPSVGASKNLVEVLFLGNHFQGCLPYQIGLLRKATVFDVSKNNLTGPIPRSFGCLESIRYLNLECNQFYGEVPETVCQLPGLRDRGNFSLSNNYFTQVGPACRKLIECNVLDVSNNCILGLPNQRPHGECSHFFSNLKPCPNPKSLNYVPCKKYDPSSHTHTTTSTPPAPLSYNSLDPRLHR* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0014 431 MobiDBLite consensus disorder prediction 406 421 - -
Vra11g0014 431 SUPERFAMILY L domain-like 95 371 - -
Vra11g0014 431 Gene3D Ribonuclease Inhibitor 234 426 IPR032675 -
Vra11g0014 431 Gene3D Ribonuclease Inhibitor 66 233 IPR032675 -
Vra11g0014 431 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 37 415 - -
Vra11g0014 431 PANTHER BNAC05G26270D PROTEIN 37 415 - -
Vra11g0014 431 MobiDBLite consensus disorder prediction 406 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0014 Vra-Chr11 165480 167135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0014 61 384 Leucine-rich Repeat extension Gene Families AT3G24480 41.718 3.37e-75 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0014 - - gmx:100795489 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0014 11 165480 167135 Vra11g0014 11 165480 167135 ECH