Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0010 ATGGAGGAAGATGAAATGGTTTGGTGTTCGTCTGATTCTTGTTCTTCTGATTCGGGAGAGGAAGATATCGAAGAACGGAAATCTGATTTTTGTTCTTCTGATTCGGGAGAGGAAGATAACGAAGAACGGAAATCGCAGAACGTGGATGCACTAGTAAGGGGTAATCTTGTCGTGAAGAGACAGTCGCTGCTACCGCGGCTTCTTTCAGTATCGCAAGGGGCGGCCGTGTGTAGAAAACCCTTTAAACCTCCATCTTCCAAAACTCATGCTTCCACTTACAATCAAGACCTCACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTCCTATTCCTAGACCTGCCATCCCCGACTTCCAATTCAACGTATCGGTAAGTGATGTTAATGTTCCTGTTTCTGAGGAGCCGAAACCATCTCTGCCCCCGGGGATCGACCCTTTAGTACTGTGGCACCCTCAAGACTCCCACGATGACCCCTCTAATACTAATTTTACCACCATTACAGTTGACCCTTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCTGGTCTGTGTACCACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTCTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTACTTTGTCAAGGGTTTGATGGCAAGCCATTGGTTCGAAAATCTATCATAGTGACTCCTACCAGCCTTGTCAGTAATTGGGAAGCTGAAATAAAAAAGTGGGTTGGTGAAAGAGTTCGTCTTGTCGCTCTATGTGAGAGTTCAAGAGAAGATGTTGTCTCTGCGATTGACAGTTTTACAAATCCCGAAAGAAATTTACAGGTTCTCATTGTTTCATATGAGACATTCCGAATGCATTCTTCAAAGTTTAGCTCTAGTGACTCATGTGACCTTCTCATATGTGATGAGGCTCACAGATTGAAAAATGATCAAACAATAACAAACCGGGCATTGGCAGCTCTTCCCTGCAAACGAAGAATTTTATTGTCAGGAACTCCCTTACAGAATGATTTAGAAGAATTCTTTGCAATGGTTAACTTTACCAATCCTGGAATATTGGGCAGTATTGCACATTTTCGACGTTACTATGAGGCACCAATTATTTGTGGAAGAGAACCTGCAGCCACTGTTGAAGAGAAGAAGATAGGTGCTGAACGCTCTGCTGAATTAAGTGTCAATGTTAATAGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCTAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATATAAACATTTTATACAATCGAGAAATGTGAAGAGGGCAATTACTGATAAACTGAACCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAATTGTGCAATCATCCAAAGCTTATCTATGATACCATACGAAGTGGCAGCCCAGGAACTTCAGGCTTTGAGGAGTGTATCCGATTCTTCCCGCCTGAAATGTTATCTGGGAGGTCTGGCTCGTGGACCGGAGGACATGGAGCATGGGTTGAACTATCCGGGAAAATGCATGTCTTGGCAAGATTACTTGCTCATTTACGTCACAGAACTAATGACCGCATTGTCCTTGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGCCGTGAACGAAGGTACCCTCATTTGAGGCTTGATGGCTCCACGTCAATTAGTAAAAGGCAGAAGTTGGTCAACTGCTTCAATGATCCATCGAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATCGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAACCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGTTTATATTTATAGATTTTTGAGTGCTGGAACTATAGAAGAAAAGGTTTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACTGATAGCCTTGTGTCGCAGGGTAACTTTCTTTCAACAGAGGATCTTCGTGATTTGTTTACTTTTCATGAAAACATCAAGTCAGAGATTCATGAAAAGATGCGATGCAGTCGATGTGAAACACATGGTGGTCCTCAAAGCACTGATGCCCAATCAACAGCAGCTAATGAATCGGAAGAAGAAACCTCCGATATAGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAGCCCATTGGAAGAAGATTTAGGAAGTTGGGGCCATCACTTTTTACCTAATTCAGTACCAGATGCCACCCTTCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTAACGGACGACTGGTACCCATCGAGTCTAAGATGAGTCCCAAGCTACAGAAAAAGGAACCAAATAAGGAATTACTCAAATCAATTCCCACTCCTATTTCTTTGCAGAACAGGTTACCGCTGCAGTCTGCTTCTGGTGTTGCTAGTATGTCATCATCCACTCCCAATGTAAATTCTGTGCGGATTAGCAAAAACATCTCCAATTACTCTCTTGTTAGTAAAGTATTACCACACAAAAGATCACGTCCTGCTAATATCAGTTATAGTAATTTTAAGTAA 2721 0.4245 MEEDEMVWCSSDSCSSDSGEEDIEERKSDFCSSDSGEEDNEERKSQNVDALVRGNLVVKRQSLLPRLLSVSQGAAVCRKPFKPPSSKTHASTYNQDLTRRLSARKRFVPWGSSSPIPRPAIPDFQFNVSVSDVNVPVSEEPKPSLPPGIDPLVLWHPQDSHDDPSNTNFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPLVRKSIIVTPTSLVSNWEAEIKKWVGERVRLVALCESSREDVVSAIDSFTNPERNLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGSIAHFRRYYEAPIICGREPAATVEEKKIGAERSAELSVNVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSRNVKRAITDKLNQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEECIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRHRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGSTSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVSQGNFLSTEDLRDLFTFHENIKSEIHEKMRCSRCETHGGPQSTDAQSTAANESEEETSDIGGFAEIAGCLQNLKRSEKQVGSPLEEDLGSWGHHFLPNSVPDATLQASAGDEVTFVFTNQVNGRLVPIESKMSPKLQKKEPNKELLKSIPTPISLQNRLPLQSASGVASMSSSTPNVNSVRISKNISNYSLVSKVLPHKRSRPANISYSNFK* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0010 906 CDD DEXHc_RAD54 182 423 - -
Vra11g0010 906 MobiDBLite consensus disorder prediction 1 47 - -
Vra11g0010 906 PANTHER SNF2/RAD54 FAMILY MEMBER 25 790 - -
Vra11g0010 906 Gene3D - 155 422 IPR038718 -
Vra11g0010 906 CDD SF2_C_SNF 534 662 - -
Vra11g0010 906 MobiDBLite consensus disorder prediction 727 752 - -
Vra11g0010 906 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 540 701 IPR001650 -
Vra11g0010 906 SMART ultradead3 178 381 IPR014001 -
Vra11g0010 906 Pfam Helicase conserved C-terminal domain 542 650 IPR001650 -
Vra11g0010 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 423 IPR027417 -
Vra11g0010 906 MobiDBLite consensus disorder prediction 730 749 - -
Vra11g0010 906 MobiDBLite consensus disorder prediction 20 47 - -
Vra11g0010 906 Gene3D - 423 731 IPR027417 -
Vra11g0010 906 Gene3D - 445 714 - -
Vra11g0010 906 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 373 IPR014001 -
Vra11g0010 906 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 25 790 - -
Vra11g0010 906 SMART helicmild6 567 651 IPR001650 -
Vra11g0010 906 Pfam SNF2-related domain 185 491 IPR000330 GO:0005524|GO:0140658
Vra11g0010 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 728 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0010 Vra-Chr11 133618 145303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0010 158 710 RAD5 or RAD16-like Gene Family AT1G02670 24.161 4.78e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra11g0010 SNF2_N 7.8e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0010 K10875 - gmx:100781631 1481.46