Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1648 ATGGCTTCCTCTGCGCCAGGTTCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACCCTTCCGCGTGAAGGGGTGAGAGTTTATTACTTCCCCCAAGGTCATATGGAACAGCTCGAGGCATCTATGAATCAGGGGTTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTGTGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGACAAGCCCTGACGATCCTCTACCAGAACCTCCAAGATGTACTGTTCATTCATTCTGCAAGACTCTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTGCCGCCGCTGGATATGACGCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGCAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGTTAGTGGCCGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTACGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAGGCAACATGCCATCTTCTGTTATATCTAGTCATAGTATGCATCTGGGTGTTCTTGCCACTGCATCTCATGCCATTGCCACAGGAACCTTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGAATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATTGTGGGTGTTGGAGATAATAAATCGTCAGTCTGGACTAATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCTTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACTCCTCCCACAAACTCCCAGCCTTCCCAAAGAAACAAGAGATCACGGCCTCCTGTTCTTCCTTCAACATTGGCTGATTCTTCTCTGCAAGGTGTAAGGAAATCACCAGTTGATTCTGCACCATTCTCTTATCGTGACCATCAACACGGACGAGACATCTATCCACCAGCCAAATTCAATTCTACTGCAACTGGCTTCCTTGGTTTTGGTGGGAACTGTTCTGCTTCCAACAAATCAATATATTGGTCTAGTAGGACAGAAAACTCTACAGAATCTTTTTTACCCGTAGCACTTAAAGAATCTGGAGAGAAGAGAAATGGGACTGCAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTCGATAATTCTAATGGGGAAGAAAGCCTACCAATGGTCACTTTGTCAGGAAGGTTGGGTGATGATGTCCCCCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCGGAACCATCAAATATTAATCGATCTGATATTCCTTCGGTAAGTTGTGATGCTGAAAAATCATGCCTGCGGTCTCCCCACGAGTCTCAGAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCAGTTGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAAATGTTTGACATCAAGGATGAACTTTGTGGATCCACAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGACGATATGATGATGGTTGGGGATGACCCATGGCTTGAGTTTTGTAGCATTGTGAGGAAAATTTTCATCTATACTGCTGAGGAGGTGAAGAAGCTTTCACCTAAAATAGGACTTCCCATCAGTGAGGAAGTTAAACCCAGCAAAATGGACTCTGAAGCAATAGTCAATCCTGAGGACCAGTCATCTATTGTGGGGTCCGGTTGTTAA 1995 0.4426 MASSAPGSTNDALYKELWHACAGPLVTLPREGVRVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQGNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWTNSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPTNSQPSQRNKRSRPPVLPSTLADSSLQGVRKSPVDSAPFSYRDHQHGRDIYPPAKFNSTATGFLGFGGNCSASNKSIYWSSRTENSTESFLPVALKESGEKRNGTANGCRLFGIQLLDNSNGEESLPMVTLSGRLGDDVPLPSLDAESDQHSEPSNINRSDIPSVSCDAEKSCLRSPHESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKDELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPISEEVKPSKMDSEAIVNPEDQSSIVGSGC* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1648 664 Gene3D - 115 220 IPR015300 -
Vra10g1648 664 SUPERFAMILY DNA-binding pseudobarrel domain 107 247 IPR015300 -
Vra10g1648 664 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra10g1648 664 MobiDBLite consensus disorder prediction 643 664 - -
Vra10g1648 664 MobiDBLite consensus disorder prediction 491 515 - -
Vra10g1648 664 ProSiteProfiles PB1 domain profile. 540 633 IPR000270 GO:0005515
Vra10g1648 664 SMART B3_2 118 220 IPR003340 GO:0003677
Vra10g1648 664 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Vra10g1648 664 Gene3D - 535 629 - -
Vra10g1648 664 MobiDBLite consensus disorder prediction 650 664 - -
Vra10g1648 664 PANTHER AUXIN RESPONSE FACTOR 1 10 626 - -
Vra10g1648 664 Pfam AUX/IAA family 537 630 IPR033389 -
Vra10g1648 664 Gene3D - 281 353 - -
Vra10g1648 664 SUPERFAMILY CAD & PB1 domains 541 617 - -
Vra10g1648 664 MobiDBLite consensus disorder prediction 349 385 - -
Vra10g1648 664 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Vra10g1648 664 MobiDBLite consensus disorder prediction 346 395 - -
Vra10g1648 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 626 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra10g1648 664 CDD B3_DNA 116 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1648 Vra-Chr10 20892629 20898731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1648 2 658 B3 DNA Binding Superfamily AT1G59750 71.579 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra10g1648 AUX_IAA 1.9e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1648 K14486 - gmx:100793224 1279.23