Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1647 ATGGAAGACGGCAAGAGTATGGGTCGAAAGGAGAAGAGGAAGGCAATGAAGAAAATGAAGCGGAAGCAGACGAGGAAGGAGGCGGCGGAGAGGGAGCGACGGGAGGAGGAGGACCGCCTCAACGATCCGGAGGAGCAGAGGCGGATGCAATTGCTGGAGCAGGAGGAAGCGGAGAGAATGCAGAGGGACACCATCCTCTTTCAGGAGAGGGAGAAGGCTTTCATGGATATGATAATCACCCGACAACGACGGCAGCAGCAGCAAGAACGAGAGCAAGAGCAGAGCATCGACCACGACCATGAATTTGAATACGTGGTTCAGGAAGAAGGCCCTCCGGAGATTATTTGGCAAGGAAACGAGATCATCTTCAATAAGAAACAGGTCAGAGTTAGGGTTCAGGACACCGACACTGACACCCACAATAACCATGCGCAGCAGAATGACGACATTAGACCTACATCCAATCCCTTACCCCCGGAATCGGGATTGGAATCGCGCACTCAGAACCTCCAGGACATTGCTGAACAAATACCCAATTTCGGAACTGAACAGGATAAAGCTCATTGCCCTTTTCATTTAAAAACGGGAGCATGTCGCTTTGGTAGGCGCTGTAGCAGAGTCCATTTTATCCCTGATAAATCCTCCACTCTTCTAATGGAAAACATGTACAACGGTCCTGGCCTTGCTTGCGATCGGGACCAAGACGAGGGCCTCGAGTATACAGATGAAGAGATTGATCGCTGCTTTGAAGAATTTTATGAGGATGTCCACACAGAATTCTTGAAGTTTGGGGAAATTGTGAACTTCAAGTTTGACCACACAACACCTTCGGATTCCAACACTTCAAAGAAAAGATGTTCATGTACCTGTGGAACCTCTATTATGGTTTTTGCATGTGGAAGAGGAGGACACAATGATAGGGGAAGACATCCGCAACATGTCCTTAATGCATATACGGTAAGAGAATGTCACATTCAAGAAAATTGCTTCTCCTTGCACGACTTTCCGAACAAGATAGCCAATGTCTCTAAAGCTGAAGCTGTTGATCCCAAATTCTCTTATGAAGAATACCAAGAGTACTTGAGGTTGAAGTCTAATAATTTGGCACAATCATCTACAAATCCAAGTTCATCAACAACTTGCGTCTCACAATCCATGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTGTATGTACAGTACAAAGCTTTGGATTCTGCGCTGCACGCAGCAAATTTAATGAATCATCATGACTTTGCTGGAAAACGGGTAACTTGTCAATTTGTTAACTTGACAAGATGGAAGGTTGCCATATGTGGCGAGTATATGAAATCGGGTTTCAAGACTTGTTCTCGAGGAACAGCATGCAATTTTATTCACTGTTTTCGTAATCCTGGTGGAGACTATGAATGGGCTGATTCTGACAAACCTCCCCCAAAATTTTGGGTAGAAAAGATGATCGCTTTATTTGGTTATTCTGATGATTATGAGACTTCAAGGGAGCAGGGAAATTTTAGTTTGTCAAAAACAGATTCTGACAGGTACCACTGTAGAAGGTCAAGATCCAGAGAGATGGATCAGATAAGTTGTGGTTATTCTGGTAGAAGAAAACATGAAGATGAAAGAAAGCAAAGAACTCCCTATGAGGATCGGAATGCTAGCTTAAAAAACACTCGTAAAAGAAAATCCAGAGGCAGAACTCCTGATACCGACTCTGACAGAGAATGGTTAGAAAAGGAGGAAATTAGGGAAAGACGCCATGAATACACTAGGAATGGCTCATTTAATAAGAGCAGGGATGAAAATAGCAGAAGCCACGAAGAGGATTCTGATGTGGATTGTGATACCAGGGACAATGAAAAACAGCATGGAAGAAACCCAAGAAAGTGCGACAAAGACATCAGGGTCTGGATTAATGAGGCTGCTGGTTTGGATGGGGACAGAGATGTGAGAAAGCACCGTATTAGGGAAAGCTCAGGACATCAGAGTGGTGACGCTTCTGAATCCAACAAAGATTTGTTTGGTAGAGTGGAGATGGAAACACTACATGATCACTCTAGGAAAACATATAGTCACAGAAGATCGGGTGTTCAGGTGTCTGTAAAAGGAAGAGATCAAAACGACAAAGTTGATAGAGACGGGTCCCGGAAGGACAGTTACAAACGAGATCATCACAAAAGGAAGTAA 2193 0.4419 MEDGKSMGRKEKRKAMKKMKRKQTRKEAAERERREEEDRLNDPEEQRRMQLLEQEEAERMQRDTILFQEREKAFMDMIITRQRRQQQQEREQEQSIDHDHEFEYVVQEEGPPEIIWQGNEIIFNKKQVRVRVQDTDTDTHNNHAQQNDDIRPTSNPLPPESGLESRTQNLQDIAEQIPNFGTEQDKAHCPFHLKTGACRFGRRCSRVHFIPDKSSTLLMENMYNGPGLACDRDQDEGLEYTDEEIDRCFEEFYEDVHTEFLKFGEIVNFKFDHTTPSDSNTSKKRCSCTCGTSIMVFACGRGGHNDRGRHPQHVLNAYTVRECHIQENCFSLHDFPNKIANVSKAEAVDPKFSYEEYQEYLRLKSNNLAQSSTNPSSSTTCVSQSMVCKNGSFHLRGNVYVQYKALDSALHAANLMNHHDFAGKRVTCQFVNLTRWKVAICGEYMKSGFKTCSRGTACNFIHCFRNPGGDYEWADSDKPPPKFWVEKMIALFGYSDDYETSREQGNFSLSKTDSDRYHCRRSRSREMDQISCGYSGRRKHEDERKQRTPYEDRNASLKNTRKRKSRGRTPDTDSDREWLEKEEIRERRHEYTRNGSFNKSRDENSRSHEEDSDVDCDTRDNEKQHGRNPRKCDKDIRVWINEAAGLDGDRDVRKHRIRESSGHQSGDASESNKDLFGRVEMETLHDHSRKTYSHRRSGVQVSVKGRDQNDKVDRDGSRKDSYKRDHHKRK* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1647 730 Gene3D - 342 447 IPR012677 -
Vra10g1647 730 MobiDBLite consensus disorder prediction 528 577 - -
Vra10g1647 730 Gene3D - 214 291 IPR012677 -
Vra10g1647 730 PRINTS U2 auxiliary factor small subunit signature 189 208 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vra10g1647 730 PRINTS U2 auxiliary factor small subunit signature 208 228 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vra10g1647 730 PRINTS U2 auxiliary factor small subunit signature 246 261 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vra10g1647 730 SUPERFAMILY RNA-binding domain, RBD 212 437 IPR035979 GO:0003676
Vra10g1647 730 MobiDBLite consensus disorder prediction 528 558 - -
Vra10g1647 730 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Vra10g1647 730 SMART c3hfinal6 184 210 IPR000571 GO:0046872
Vra10g1647 730 SMART c3hfinal6 435 464 IPR000571 GO:0046872
Vra10g1647 730 MobiDBLite consensus disorder prediction 651 730 - -
Vra10g1647 730 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 436 463 IPR000571 GO:0046872
Vra10g1647 730 ProSiteProfiles Zinc finger C3H1-type profile. 435 465 IPR000571 GO:0046872
Vra10g1647 730 MobiDBLite consensus disorder prediction 673 689 - -
Vra10g1647 730 MobiDBLite consensus disorder prediction 23 59 - -
Vra10g1647 730 MobiDBLite consensus disorder prediction 591 630 - -
Vra10g1647 730 MobiDBLite consensus disorder prediction 1 59 - -
Vra10g1647 730 MobiDBLite consensus disorder prediction 137 165 - -
Vra10g1647 730 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 9 270 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vra10g1647 730 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 382 728 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vra10g1647 730 MobiDBLite consensus disorder prediction 146 165 - -
Vra10g1647 730 Coils Coil 12 46 - -
Vra10g1647 730 MobiDBLite consensus disorder prediction 706 722 - -
Vra10g1647 730 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 9 270 - -
Vra10g1647 730 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 382 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1647 Vra-Chr10 20881184 20891315 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra10g1647 zf-CCCH 5.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1647 K24273 - gmx:100789091 439.884