Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1644 ATGGCGGCGGCGGTAACTAGAAGAAGAGACGGTATGCGTGGCGTCCACCAGTGGGCGTGGCCTAAACCCAATAAATGGGTGAAGGGGAAAGTGGTTGGATGTGGATCTTTCGGCACTGTGCATTTGGCGATGAACAAATCAACGGGTGCCCTTTTTGTTGTAAAATCATCACATTCGAGGGCTGGACGTGAGGCTTTGGATGAAGAGGTAAAAATCCTGAAAATATTTAATTCCTCACCATACATTGTCCAATGTTTAGGGACAGAGGAGGAGGAACATGGCAAGCTGAATGTTTTTATGGAGTATATGTCAGGAGGTAGTTTGGCAGACGTGGCTCACAAATTCGGTGGGTCATTGGATGAAGAGGTGGTTCGTGTGTATACCAGGGAAATTCTTCACGGCCTGAACCATCTTCACCTTCAAGGTATTGTACACTGCGATCTCAAGTGCAAGAACGTGCTTTTGGACCCACATGGCAACGTGAAGCTGGCAGATTTTGGATGTGCCAGAAGGGCAAATGAGTTGGGAAAGTCATTTGGTGGGACCCCTCTGTGGATGGCTCCTGAAGTTCTGAGGAACGAGTCTGTTGATTTGTCTGCAGATATATGGTCCTTGGGATGCACAGTTATTGAGATGGCTACTGGCACTCCCCCTTGGGTTCATCAGGTTTCAAATCACGTCAGTGATGTGCTCTGGATTGCCCATGGTGATGCTATTCCTCAGTTTCCACAACATTTCTCCAAGGAGGGTTTGGATTTCTTGAGCATGTGCTTGCAGAGAGATCCCCGTAAGAGGTCTACGCCTCAGAAGTTACTTTCCCATCCCTTTGTTACCTCAACACCACCTTCTCAACATCAATATCAACAACAACATCAACAGGCTTCCTCTCCCGCAAGCGTCTTGGAGGTTCACGATTTCAGGGACTCTTGTGATATACATGATTTCTCTCTCACAAACACACTTGCATCTTACACTGATTACTCCAAAGGAATAGCTGTGTGTAAAGCGGAAGAGAGTGCCTTGGGCTCATCGGGGAATTGGATTACAGTTAGATCAGGCTGA 1062 0.4727 MAAAVTRRRDGMRGVHQWAWPKPNKWVKGKVVGCGSFGTVHLAMNKSTGALFVVKSSHSRAGREALDEEVKILKIFNSSPYIVQCLGTEEEEHGKLNVFMEYMSGGSLADVAHKFGGSLDEEVVRVYTREILHGLNHLHLQGIVHCDLKCKNVLLDPHGNVKLADFGCARRANELGKSFGGTPLWMAPEVLRNESVDLSADIWSLGCTVIEMATGTPPWVHQVSNHVSDVLWIAHGDAIPQFPQHFSKEGLDFLSMCLQRDPRKRSTPQKLLSHPFVTSTPPSQHQYQQQHQQASSPASVLEVHDFRDSCDIHDFSLTNTLASYTDYSKGIAVCKAEESALGSSGNWITVRSG* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1644 353 SUPERFAMILY Protein kinase-like (PK-like) 17 299 IPR011009 -
Vra10g1644 353 Pfam Protein kinase domain 28 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1644 353 SMART serkin_6 26 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1644 353 Gene3D Transferase(Phosphotransferase) domain 1 23 338 - -
Vra10g1644 353 ProSiteProfiles Protein kinase domain profile. 26 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1644 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Vra10g1644 353 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 16 352 - -
Vra10g1644 353 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 16 352 - -
Vra10g1644 353 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Vra10g1644 353 CDD STKc_MAPKKK 25 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1644 Vra-Chr10 20861225 20862976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1644 25 278 MAP Kinase Kinase Kinase AT3G06030 44.610 9.99e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra10g1644 Pkinase 3.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1644 - K20716 vra:106775623 703.745