Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1643 ATGGGAAGGAAAAAGCCAGAGGATGCTGGCCCATCTGCGAAGACCAAGACAAGTAAAGATGCTCCCAAGAAGGAAAAATTTTCTGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGACAAACCCAAAAAGGTCTCTTCTACCTCCAGTAAGCCGAAGCCAAAATCTGCTCCAAAAGCTTCTGCATACACCGATGGTATTGATCTTCCGCCTTCTGATGATGAAGATGATGATCTCCTAGAACAGGAGGAGGAGAAAAATAATGCATCCAAACGTGGAAGTCAGCAGCAAAGGCCTGATTTAAAGCCACTTGATGTGCCTATTGCTGATAAAGAGTTGAAAAAGCGTGAAAAGAAGGATCTTTTAGCAGCACATGCTGCTGAGCAGGCAAAGAGGGAGGCTCTTAAGGATGATCATGATGCATTCACTGTGGTCATTGGAAGCCGAGCTTCGGTGCTTGATGGAGATGCTGATGCTGACGCTAATGTGAAAGATATAACAATAGAAAATTTCTCTGTTTCTGCTCGTGGTAAAGAACTTTTGAAGAATGCATCAGTGAAGATATCTCATGGGAAGAGGTATGGTTTGGTTGGACCCAATGGAATGGGCAAGTCCACGCTGCTGAAACTTCTTGCCTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGACAAGACAGCTCTTGAAGCCGTTGTTTCAGCTAATGAAGAACTAGTTAAAATTCGGCAGGAGGTTACCTCTCTTCAGAATGCAGCTTCTGCTGAAGAAAGTGTAGACAAAGATGATAATGAAGATGATACGGGAGAAAAGCTAGCAGAGCTATATGAAAAACTGCAGTTGATGGGATCTGATGCGGCTGAAGCTCAGGCATCAAAGATATTAGCTGGTTTGGGTTTTACAAAGAATATGCAAGGCCGCCCTACAAAATCCTTCAGTGGTGGCTGGAGAATGAGAATTTCATTAGCTCGAGCACTTTTTGTACAACCAACGCTATTATTACTTGATGAACCCACGAATCATCTCGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTTTGGTAGTTGTCTCACATGATAGAGATTTTCTCAATACAGTATGTACTGAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGTGGATATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAGTTGAAAGCAGCTAAAAGGAGTGGAAACCGAGCCCAGCAAGAAAAGGTTAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAAGCAAAGGAAAGGGCAAGGTTGATGAGGATAATGCCCCATCGGAGGTTCCACAGAAGTGGAGGGATTACAGTGTGGAATTCCACTTTCCTGAACCCACTGAGCTTACACCCCCACTTTTACAGCTCATTGAGGTCAGCTTTAGCTACCCAAACCGAGAGGATTTTAGGCTATCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCCACGTTGTTGAATCTTCTAGCTGGTGATTTGGTTGCTTCTGAGGGTGAAGTACGAAGAAGTCAGAAGTTGAGGATAGGAAGATACTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCTGATCAGGAGGGACTTAGCAAGCAGGAGGCTGTTCGTGCAAAACTTGGTAAGTTTGGGTTACCAAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTTGTCTTCACTTCTATTTCCATGTCAAAGCCACACATTTTATTGTTAGATGAACCAACCAATCATCTGGACATGCAAAGTATTGATGCATTGGCAGATGCACTGGATGAATTCACTGGTGGAGTTGTTCTTGTCAGTCATGATTCAAGATTGATATCACGTGTGTGTGATGATGAAGAAAGGAGTCAAATTTGGGTTGTCGAGGATGGTACTGTCAAAACTTTCCCCGGAACATTTGAGGATTACAAGGAGGATTTGATGAGAGAGATTAAAGCTGAAGTTGATGACTGA 2178 0.4334 MGRKKPEDAGPSAKTKTSKDAPKKEKFSVSAMLASMDEKPDKPKKVSSTSSKPKPKSAPKASAYTDGIDLPPSDDEDDDLLEQEEEKNNASKRGSQQQRPDLKPLDVPIADKELKKREKKDLLAAHAAEQAKREALKDDHDAFTVVIGSRASVLDGDADADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKIRQEVTSLQNAASAEESVDKDDNEDDTGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKNMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFAAAKEASKSKGKGKVDEDNAPSEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVASEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSQIWVVEDGTVKTFPGTFEDYKEDLMREIKAEVDD* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1643 725 Coils Coil 73 93 - -
Vra10g1643 725 Coils Coil 415 435 - -
Vra10g1643 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 498 723 IPR003439 GO:0005524
Vra10g1643 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 421 IPR027417 -
Vra10g1643 725 SMART AAA_5 524 700 IPR003593 -
Vra10g1643 725 SMART AAA_5 191 395 IPR003593 -
Vra10g1643 725 CDD ABCF_EF-3 498 700 - -
Vra10g1643 725 Coils Coil 243 263 - -
Vra10g1643 725 MobiDBLite consensus disorder prediction 1 107 - -
Vra10g1643 725 MobiDBLite consensus disorder prediction 432 472 - -
Vra10g1643 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 711 IPR027417 -
Vra10g1643 725 CDD ABCF_EF-3 167 396 - -
Vra10g1643 725 Gene3D - 164 448 IPR027417 -
Vra10g1643 725 Coils Coil 119 139 - -
Vra10g1643 725 PANTHER - 5 725 - -
Vra10g1643 725 ProSitePatterns ABC transporters family signature. 323 337 IPR017871 GO:0005524
Vra10g1643 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 167 426 IPR003439 GO:0005524
Vra10g1643 725 MobiDBLite consensus disorder prediction 1 26 - -
Vra10g1643 725 Pfam ABC transporter 182 351 IPR003439 GO:0005524
Vra10g1643 725 Pfam ABC transporter 515 650 IPR003439 GO:0005524
Vra10g1643 725 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 5 725 - -
Vra10g1643 725 Gene3D - 463 725 IPR027417 -
Vra10g1643 725 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1643 Vra-Chr10 20856282 20859689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1643 498 701 Calmodulin-binding Proteins AT2G36910 27.928 2.46e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1643 K06184 - gmx:100806865 1190.64