Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1642 ATGGGTTGCATATGCTCCAAATCAAAATCATCATCATCATCACACCAATACGTTTCTCAAAACCATACCGAAAATTTGAAGGCCACTCCATCCCCCAACACTAACCCTTTCGGAGACACCACTTCCCTCATATCCAATGTAAATCAATATTCCTATTCAAGTTCAAATGCAACTCAAGAAAAAGCCTCCACCCCAATTTTCTCGGATCAAATTCAACAGAAAGGGGACAAGAAAGCCAATGGTAATGGGGTGCGATCAACGACACAACCACAACAACAACCGAAGATGTCTAGGTTGTATAGTATAACCAGAGGGGAAAGAGGAGTACAGGTTCTCGCTGGGTGGCCCCCTTGGCTCTCTGCAGTTGCTGGTGAAGCCATTAGTGGCTGGATACCTCGTAGGGCTGATTCCTTTGAGAAGTTGGATAAGGCAATTCCTATTGTTATTCATTGTTTTCTCTTTACATCCTTATTTAATGTCACTTACCAAACAAACTTTCCTGTCATGTTGCAGATTGGCCAAGGAACTTACAGCAGTGTTTATAAAGCTCGTGATCTTGAAACAAATAAAATTGTTGCACTGAAGAAGGTTCGATTTACAAATATGGATCCAGAAAGCGTTCGTTTTATGTCAAGGGAGGTTATTGTGCTGCGGAGGCTTGATCATCCCAATGTCATGAAGCTTGAGGGCATGATTGCCTCACGGGTCTCTGGTAGCTTGTACCTTATCTTTGAATATATGGAGCACGATCTTGCAGGACTTGCAGCAATACCTGACATCAAGTTTTCCGAAGCACAGATCAAGTGTTACATGCAACAGCTTCTTCGTGGTCTAGAGCATTGCCACAGTCGTGGTGTCATGCATCGTGATATAAAAGGTTCAAATCTTCTGGTTGACAGTAATGGCAGACTGAAGATTGCTGATTTTGGGCTAGCAACTTTGCTTCAGTCAGCTCAGGGGCTGCCTTTAACAAGTCGGGTAGTGACCTTGTGGTACAGGCCACCTGAACTTTTACTTGGAGCTACAGATTATGGAACTACTGTGGATTTGTGGAGTGCTGGATGCGTTCTTGCAGAGTTGTTTGTTGGGAAGCCTATACTGTCTGGACGAACAGAGGTGGAGCAACTACATAAAATCTTCAAACTGTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGTTGCCACATGCAACAACTTTTAAACCTCAACATCCTTACATACGCGTTGTTTCTCAGACATTCAAGGATTTTCCTTCATCTACACTTAGCCTCTTGGAGGTCCTTCTAGCTGTTGAATCGGATGATCGGGGAACTGCATCTTCAGCACTTCGGCATGAGTTCTTCACAACAATGCCACTTCCTTGTGATCCATCATCTTTGCCAAAATACCCACCGAGTAAGGAGTTTGATGCGAAACTTCGCGAAGAGGAAGCTAAAAGGCGAAGAGCACCAATTAAAGGACATGAATATGAATCACTTGGGAATAATTTTAGGGAGTCTACAGCTGTGCCAGTACCTGGTGCTAATGCCGAGTTTCAGGGAACTATAGGGAAACCAGGACAGTGTAATACTAAGCACGTCTCTGAGAAGTACAACTACGAAAAGGATGACGGTTATGGTTTCTCTCGCGAACCGGTAAAGGCAACGTCAACAGCACACAATGTATTTTCTCATTCTGGCCAGTCAATGCATCCAAGTGTTTATGGATCGTCACGCACAATGAATTTGAAAGAGGAAAATGTCCTCATATGCCCTGATCATGGCTTTATATCAAGAAAGTCTGAGTTGAGCAAACATACTTCCTATTGGCAAGGTAGTGCCGCAAAATTGTCAAGATTTTCTAATTCAATTGCAGCTCGAGGTGATTCACTTCTTGAAATGAGTGGTGGTGACTTTGGTGTGAATTCGCAGTTGCCAGAAGATCAATTTGGCACGAGATATAGCCATAAAGCAGATGGTGAGTCCAACCAATTGTTAGCTGGACTCAAATCTTAA 2001 0.4328 MGCICSKSKSSSSSHQYVSQNHTENLKATPSPNTNPFGDTTSLISNVNQYSYSSSNATQEKASTPIFSDQIQQKGDKKANGNGVRSTTQPQQQPKMSRLYSITRGERGVQVLAGWPPWLSAVAGEAISGWIPRRADSFEKLDKAIPIVIHCFLFTSLFNVTYQTNFPVMLQIGQGTYSSVYKARDLETNKIVALKKVRFTNMDPESVRFMSREVIVLRRLDHPNVMKLEGMIASRVSGSLYLIFEYMEHDLAGLAAIPDIKFSEAQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLVDSNGRLKIADFGLATLLQSAQGLPLTSRVVTLWYRPPELLLGATDYGTTVDLWSAGCVLAELFVGKPILSGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATTFKPQHPYIRVVSQTFKDFPSSTLSLLEVLLAVESDDRGTASSALRHEFFTTMPLPCDPSSLPKYPPSKEFDAKLREEEAKRRRAPIKGHEYESLGNNFRESTAVPVPGANAEFQGTIGKPGQCNTKHVSEKYNYEKDDGYGFSREPVKATSTAHNVFSHSGQSMHPSVYGSSRTMNLKEENVLICPDHGFISRKSELSKHTSYWQGSAAKLSRFSNSIAARGDSLLEMSGGDFGVNSQLPEDQFGTRYSHKADGESNQLLAGLKS* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1642 666 PANTHER CELL DIVISION PROTEIN KINASE 85 143 - -
Vra10g1642 666 PANTHER CELL DIVISION PROTEIN KINASE 166 638 - -
Vra10g1642 666 Pfam Protein kinase domain 170 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1642 666 CDD STKc_CDK9_like 171 450 - -
Vra10g1642 666 PANTHER KINASE CDK9, PUTATIVE-RELATED 166 638 - -
Vra10g1642 666 PANTHER KINASE CDK9, PUTATIVE-RELATED 85 143 - -
Vra10g1642 666 MobiDBLite consensus disorder prediction 1 40 - -
Vra10g1642 666 ProSitePatterns Protein kinases ATP-binding region signature. 172 195 IPR017441 GO:0005524
Vra10g1642 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Vra10g1642 666 Gene3D Phosphorylase Kinase; domain 1 157 248 - -
Vra10g1642 666 SUPERFAMILY Protein kinase-like (PK-like) 160 458 IPR011009 -
Vra10g1642 666 Gene3D Transferase(Phosphotransferase) domain 1 249 488 - -
Vra10g1642 666 MobiDBLite consensus disorder prediction 631 666 - -
Vra10g1642 666 ProSiteProfiles Protein kinase domain profile. 166 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1642 666 MobiDBLite consensus disorder prediction 55 96 - -
Vra10g1642 666 SMART serkin_6 166 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1642 Vra-Chr10 20844511 20849985 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1642 166 484 Core Cell Cycle Gene Families AT5G10270 48.387 8.30e-105 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra10g1642 Pkinase 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1642 - - gmx:100805055 870.537