Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1633 ATGGCCTCCGCTAGCCTCGGAACTGGTGGGGTCGGCAGTTCCAGGTCCGTTAACGCTGCCTTCAGGGGTTCTTCCAGTTCCGTCGATTGGCTTGGCAGAGAGATGCTCGAGATGAGATTGAGAGACCACGACGAAGACAGGGATAGTGAGCCTGACATCATCGATGGTGTGGGTGCTGAGACCGGGCACGTGATAAGAACCAGTATCGGTGGCCGAAATGGTCAATCTAAGCAGAATGTCAGTTATATTGCAGAACACGTGGTTGGAACGGGCTCTTTTGGTGTTGTTTTTCAGGCAAAATGTAGAGAAACGGGAGAGATTGTAGCTATCAAGAAGGTTCTCCAGGATAAGCGCTACAAGAATAGAGAGTTACAGATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTACGGCATTGTTTCTTCTCAACAACTGACAAAGAAGAAGTTTACTTGAATCTTGTCCTTGAATATGTTCCTGAAACCGTGAATCGCATCGCAAGGAGCTACAGCAGGATTAACCAGCGAATGCCTTTGATATATGTAAAGCTTTATACCTACCAGATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCACCGTGACATCAAACCTCAGAACCTACTTGTGAATCCCCATACTCATCAGCTGAAACTATGTGATTTTGGTAGTGCAAAAGTGTTGGTAAAAGGAGAACCAAACGTTTCTTACATCTGTTCAAGATACTACCGTGCTCCAGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGACATATGGTCTACTGGTTGCGTAATGGCTGAATTACTCCTTGGACAGCCATTGTTTCCTGGGGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCAACTAGGGAGGAGATAAAGTGCATGAACCCTAATTATACTGAGTTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCGTTGGAGGCTTGCATTCATCCCTTTTTTGATGAACTGAGGGACCCGAACACCCGTCTTCCTAATGAACTTTCTGGCATACCCCCTGATGTCATCAATCTTCTTATTCCAGAGCATGCGCGTAAACAGAACTTATTTATGGCTTTGCACGCTTAG 1224 0.4493 MASASLGTGGVGSSRSVNAAFRGSSSSVDWLGREMLEMRLRDHDEDRDSEPDIIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEEVYLNLVLEYVPETVNRIARSYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNELSGIPPDVINLLIPEHARKQNLFMALHA* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1633 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Vra10g1633 407 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524
Vra10g1633 407 SMART serkin_6 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1633 407 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 404 - -
Vra10g1633 407 CDD STKc_GSK3 77 369 IPR039192 -
Vra10g1633 407 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 404 - -
Vra10g1633 407 ProSiteProfiles Protein kinase domain profile. 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1633 407 Pfam Protein kinase domain 84 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1633 407 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Vra10g1633 407 SUPERFAMILY Protein kinase-like (PK-like) 81 380 IPR011009 -
Vra10g1633 407 Gene3D Transferase(Phosphotransferase) domain 1 162 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1633 Vra-Chr10 20802077 20807649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1633 88 374 Core Cell Cycle Gene Families AT1G76540 35.254 2.51e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vra10g1633 Pkinase 1.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1633 K03083 - gmx:100799387 814.683