Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1616 ATGGCTGTACATACAAAATTCCGGCTCATTACTTACTCACAGGAGATTGTTGATGGACAGCCTATTTTTGTCTCTTCAAACTCCCTTCCTACCAAGGCTTTGAAATATGAACCTGCAGGTCATTCTTTCCATTCTGCTGCACTTAAACTTCGTGGTGTTCAGGAAGACAAGAATGAGGCTGATGACAAAAAAGTGCCTGATGACAAGGAACAAACGTCCCTTCCATCTGATTCTTATAGCAGTAAGAGCAAAAAGAAATCTGGTACTGGAGACAAACAACAAGATCACTATGCATTATTGGGTCTGGGTCATCTAAGGTATCTGGCTACTGAGGATCAAATCCGTAAAAGCTATCGTGAAACTGCCTTGAGGTTTCATCCTGACAAACAGGCTGCTCTTCTTCTGGCTGAAGAAACTGAAGCTGCCAAACAAGCAAAGAAGGATGAAATAGAAAGTCACTTCAAGGCAATTCAGGAAGCATATGAAGTGCTGATTGATCCTGTGAAGAGAAGGATTTATGATTCCACAGATGAGTTTGATGACGAGATTCCCACTGATTGTGCTCCACAGGATTTCTTTAAGGTGTTTGGTCCTGCTTTTATGAGGAACGGACGGTGGTCAGTTAATCAACCAATTCCAACACTAGGTGATGATAATACTCCATTAAAAGAAGTTGATAATTTCTACAATTTTTGGTACTCCTTTAAAAGTTGGAGGGAGTTTCCTCATGCTGATGAGTTTGATCTCGAGCAAGCTGAATCTCGAGACCACAAGAGGTGGATGGAAAGGCAGAATGCAAAATTGACAGAAAAAGCTAGGAAGGAAGACTATGCACGGATTCGCACTCTTGTTGATAATGCTTACAAGAGGGACCCCAGAATATTGAGAAGAAAGGAAGAAGAAAAAGCTGAGAAACAAAGGAAAAAGGAGGCTAAGTACCTGGCAAAGAAATTGCAGGAAGAAGAAGCAGCCAGAATTGCAGAGCAAGAGAAGCAACGAAAAGAGGAGGAAGAGAGACAAGCTGCAGAAGCTGCTTTACAACAAAAGAAGGTGAAAGAGAAAGAGAAAAAGCTTTTGCGGAAGGAGCGAGCTCGCCTTCGAACACTTTCAGGACCTATTATATCCCAGCGTTTACTTGATATTTCTGATGATGATGTAGAAGGGCTTTGCATGTCACTTGATATTGAGCAGATGAGGAGTCTCTGTGAGAACATGGAAGGCAAACAGGTGTTATCAGAGCAAGCAAGTGTTTTGAGAGATGCGATGAGCTCCAAGAAAGAGGTGGCTGATGTAAAAACCAATAAACAAGATGCCAATGGTTCCATCAAGGCTAATGGCAGTGCTTCTCGAAGCAACGTTGAGAAGAAGGAGAAACCTTGGAGCAAAGAAGAGATTGATCTACTGAGGAAAGGAATGCAGAAATACCCCAAAGGAACTTCACGGAGGTGGGAGGTTATTTCAGAATACATTGGTACTGGAAGATCTGTTGAAGAAATAATGAAGGCAACTAAAACTGTACTCCTCCAGAAACCTGATTCATCAAAAGCTTTTGACACATTTCTTGAGAAAAGGAAACCTGGTGCACAATCAATTGAGTCTCCACTTTCAACCAGAGAAGAATTAGAAGGTGTATCAACTCTTGCCTCAACCAATAGCACAGAAGAGTCTCATAGCAAAAGTACAGATAATCAGAACACTGCATCTGCTAATGGAGTTTCTTCAAGTTCAGAACAGGATGTGTGGTCTGCAGTGCAGGAACGAGCACTGGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAACAAGCCAGAGATGGGAGCGAGTTGCAACAGCAGTACCTGGGAAGACTGTGAATCAGTGTAAGAAAAAATTTGCAATGATGAAGGAGAATTTCAGGAACAAGAAAAGTGCAGTCTAA 1914 0.419 MAVHTKFRLITYSQEIVDGQPIFVSSNSLPTKALKYEPAGHSFHSAALKLRGVQEDKNEADDKKVPDDKEQTSLPSDSYSSKSKKKSGTGDKQQDHYALLGLGHLRYLATEDQIRKSYRETALRFHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLIDPVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPTLGDDNTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEDYARIRTLVDNAYKRDPRILRRKEEEKAEKQRKKEAKYLAKKLQEEEAARIAEQEKQRKEEEERQAAEAALQQKKVKEKEKKLLRKERARLRTLSGPIISQRLLDISDDDVEGLCMSLDIEQMRSLCENMEGKQVLSEQASVLRDAMSSKKEVADVKTNKQDANGSIKANGSASRSNVEKKEKPWSKEEIDLLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDTFLEKRKPGAQSIESPLSTREELEGVSTLASTNSTEESHSKSTDNQNTASANGVSSSSEQDVWSAVQERALVQALKAFPKETSQRWERVATAVPGKTVNQCKKKFAMMKENFRNKKSAV* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1616 637 MobiDBLite consensus disorder prediction 47 92 - -
Vra10g1616 637 ProSiteProfiles dnaJ domain profile. 95 177 IPR001623 -
Vra10g1616 637 Pfam Myb-like DNA-binding domain 458 499 IPR001005 -
Vra10g1616 637 Pfam Myb-like DNA-binding domain 580 625 IPR001005 -
Vra10g1616 637 ProSitePatterns Nt-dnaJ domain signature. 154 173 IPR018253 -
Vra10g1616 637 SUPERFAMILY Chaperone J-domain 93 201 IPR036869 -
Vra10g1616 637 Coils Coil 296 369 - -
Vra10g1616 637 Gene3D - 571 637 - -
Vra10g1616 637 MobiDBLite consensus disorder prediction 530 574 - -
Vra10g1616 637 ProSiteProfiles SANT domain profile. 576 631 IPR017884 -
Vra10g1616 637 CDD SANT 459 501 IPR001005 -
Vra10g1616 637 MobiDBLite consensus disorder prediction 434 449 - -
Vra10g1616 637 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 1 635 - -
Vra10g1616 637 ProSiteProfiles Myb-like domain profile. 573 627 IPR001005 -
Vra10g1616 637 SUPERFAMILY Homeodomain-like 579 634 IPR009057 -
Vra10g1616 637 MobiDBLite consensus disorder prediction 428 460 - -
Vra10g1616 637 MobiDBLite consensus disorder prediction 520 574 - -
Vra10g1616 637 SMART dnaj_3 94 169 IPR001623 -
Vra10g1616 637 Gene3D DnaJ domain 78 187 IPR036869 -
Vra10g1616 637 CDD SANT 581 627 IPR001005 -
Vra10g1616 637 MobiDBLite consensus disorder prediction 50 71 - -
Vra10g1616 637 PRINTS DnaJ domain signature 100 118 IPR001623 -
Vra10g1616 637 PRINTS DnaJ domain signature 118 133 IPR001623 -
Vra10g1616 637 PRINTS DnaJ domain signature 149 169 IPR001623 -
Vra10g1616 637 Pfam DnaJ domain 95 174 IPR001623 -
Vra10g1616 637 ProSiteProfiles Myb-like domain profile. 452 507 IPR001005 -
Vra10g1616 637 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 635 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vra10g1616 637 SMART sant 577 629 IPR001005 -
Vra10g1616 637 SMART sant 456 509 IPR001005 -
Vra10g1616 637 CDD DnaJ 95 166 IPR001623 -
Vra10g1616 637 Gene3D - 452 510 - -
Vra10g1616 637 SUPERFAMILY Homeodomain-like 453 501 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1616 Vra-Chr10 20709130 20713135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1616 96 295 C2H2 Transcription Factor Family AT1G74250 28.452 2.65e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra10g1616 DnaJ 4.9e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1616 K09522 - gmx:100806665 1030.01