Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1614 ATGTCAAGCATCAATACCAGCAGTTTCACCAACCAAGTAGAAGAAAGCGATGAGGAAGATGTTGGGTACATGGAGTGTCGTCGCAACCATGCAGTAGCCATGGGAGGAGCTTGCTATGATGGATGCAATGAGTATATGAAACCAGACGCTGAGCGAAACTCCCAGGACAGTTTCCTCTGTGCATGTTGTGGTTGTCACCGCAACTTTCACCGCAAATACAATCCCCTGCAGCAAACTGAAACACAGAGTGATTATGTTCTTGATATAGTTCCTTTTTCAGGCACGCTTCAGGCAGAAAGGCCTACCAACAACAGCAACAGCAACCCAGAGCCATTGCAGCAAGTAAGGCCACTGAGGAGGAAGAGGACGACCTTCTCGGTGGAGCAGAAGAACCAAATGAGAAGGTTTGCTGATATTTTGGGCTGGAAACCTCACAAGGGTAACAGAGAGGAGATTCAACGTTTCTGCACTGACATGGGCATAAGCCGCAAGATCTTCGTGGTGTGGCTCAACAACAATCGTCACCGTGCAACTCAAACTTCCACCCAGACATCTCATCCATCAACCCCTTGA 573 0.4834 MSSINTSSFTNQVEESDEEDVGYMECRRNHAVAMGGACYDGCNEYMKPDAERNSQDSFLCACCGCHRNFHRKYNPLQQTETQSDYVLDIVPFSGTLQAERPTNNSNSNPEPLQQVRPLRRKRTTFSVEQKNQMRRFADILGWKPHKGNREEIQRFCTDMGISRKIFVVWLNNNRHRATQTSTQTSHPSTP* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1614 190 Gene3D - 102 180 - -
Vra10g1614 190 MobiDBLite consensus disorder prediction 96 113 - -
Vra10g1614 190 MobiDBLite consensus disorder prediction 96 124 - -
Vra10g1614 190 Pfam ZF-HD protein dimerisation region 21 73 IPR006456 -
Vra10g1614 190 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 73 IPR006456 -
Vra10g1614 190 ProSiteProfiles 'Homeobox' domain profile. 116 180 IPR001356 GO:0003677
Vra10g1614 190 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 23 72 IPR006456 -
Vra10g1614 190 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 176 - -
Vra10g1614 190 SUPERFAMILY Homeodomain-like 109 177 IPR009057 -
Vra10g1614 190 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 119 174 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1614 Vra-Chr10 20685970 20686714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1614 21 174 ZF-HD Transcription Factor Family AT4G24660 33.136 5.76e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra10g1614 ZF-HD_dimer 8.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1614 - - vra:106775003 377.481