Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1612 ATGGAAGAGTTTGAGTATGAAGAGGTTGTCAAAGCAACAGAAAACTTCAACCCCAGAAGGGTCATAGGAAAAGGAAGCCATGGGATGGTGTACAAAGGCTTTCTTCGATTCAAAGAAAATAACAGCTTCAGGTTGGTCGCCGTAAAGAAGCCATCGCAAGGCCTTCAATCTCTTCACGACAACTCCAAACTCGAAAACGAAATCCGTGTTCTATCTTCTCTACCCGAAAACCCTCACGTGGTTAATCTTCTGGGAACCACCAGTGGTGATGATCACGGCCACAAACTCATTGTGATGGACTTCATGCCCAATGCCTCTCTTCATGACTTGCTTCATGCCAATGAAAACCCACCCACGTGGCCCACACGCGTTCAAATCGCCATGCAAATCGCTCGTGCGGTTCAGTTTCTTCACCAAGGTAAGCCTGTGGTGATTCACAGAGACATTAAACCCTCCAATATATTGTTTGATTCACGTTGGAATGCGAAGTTGGCAGATTTCGGACTCGCGGTTAGAGGGGTTGATCCGGTGAGTCGACCCGCTGGGACAATGGGGTACTTGGACCCGTGTTACACCAGCCCAGATAAACTCAGCACTAAAAACGATATTTTCAGTTTTGGGGTTGTGTTGTTGGAGATCATAAGTGGTAGAAAGGCCATCGATGCCTGCAAAACACCGGCTTCAGTTGTGGAATGGGCGGTTCGGTTAATGGATGAACAAGTTTTGAAAGAGATATGTGATGCGAGAGTGGCACTGCCAGGTTACATGGTTGAAACAATCACTCGCCTGTTACGCTACGCTTCACGTTGTGTGTCAGAAAATGAAGATGAACGTCCTTCAGCTGGTGAAATTGTTATCGGAATGGAAAGTTGGTTGGCGAAACGAGTAAGGTTCCCCGTTTGGAGGCGCGTTTTGAATAATGGGTTGGTTTGGTTGAGGAAGAGGAAGCCGATGATGAGTATTGGTTGGCAAACTCAGACACGAATTCAGTGTATAGCAGAAGAAGAGGGTGTTGGTGTTGCAGGTGGGAAGATATCTATCACCATAAGGGAGGTTTTGGCTGATGTTAACGTTGGAGTGACTCAAATTCAGATGAGTTGA 1101 0.4659 MEEFEYEEVVKATENFNPRRVIGKGSHGMVYKGFLRFKENNSFRLVAVKKPSQGLQSLHDNSKLENEIRVLSSLPENPHVVNLLGTTSGDDHGHKLIVMDFMPNASLHDLLHANENPPTWPTRVQIAMQIARAVQFLHQGKPVVIHRDIKPSNILFDSRWNAKLADFGLAVRGVDPVSRPAGTMGYLDPCYTSPDKLSTKNDIFSFGVVLLEIISGRKAIDACKTPASVVEWAVRLMDEQVLKEICDARVALPGYMVETITRLLRYASRCVSENEDERPSAGEIVIGMESWLAKRVRFPVWRRVLNNGLVWLRKRKPMMSIGWQTQTRIQCIAEEEGVGVAGGKISITIREVLADVNVGVTQIQMS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1612 366 Gene3D Transferase(Phosphotransferase) domain 1 102 298 - -
Vra10g1612 366 Pfam Protein tyrosine and serine/threonine kinase 20 285 IPR001245 GO:0004672|GO:0006468
Vra10g1612 366 PANTHER - 1 326 - -
Vra10g1612 366 PANTHER OS01G0750732 PROTEIN 1 326 - -
Vra10g1612 366 SUPERFAMILY Protein kinase-like (PK-like) 3 295 IPR011009 -
Vra10g1612 366 Gene3D Phosphorylase Kinase; domain 1 1 101 - -
Vra10g1612 366 SMART serkin_6 16 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1612 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vra10g1612 366 ProSiteProfiles Protein kinase domain profile. 16 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1612 366 ProSitePatterns Protein kinases ATP-binding region signature. 22 50 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1612 Vra-Chr10 20680485 20682758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1612 4 299 Receptor kinase-like Gene Family AT3G59420 40.196 3.15e-57 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vra10g1612 PK_Tyr_Ser-Thr 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1612 - - gmx:100305389 430.254