Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1611 ATGGAACTATCAGATTTGCAAAACAACAAGCAAAACATCACCAACACAAACAACACCAACACAAAAGCAAACACAGGACCACCACCAGGAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGGCGGTGGTAGTGGCAGTGGTAGTGCTGCTACTCATCCTCGTCCACACCCCCATCATCATCACCAACAATCTTCTTCTTCCCATGTTGTCAGGCCAAACCCTCCATCTCCTTTCATCTCTTCCTCCACCACTTCTTCTTCTTCTAATTCTTCCTCCTCTTCCTCTTCTGCGTCAGCTTCTTCCCACATCATCGATGCCTCCTTGGCCATCGCCACCAGATCTGATGATTCCGCCAACAAGACCCAACCGCTCCCCACTGCCGTCGCCGCGCCCTCCCCCGCCGCCAACCCTCCCAAGCGATCCACCAAGGACAGACATACCAAGGTCGACGGCCGCGGCCGCAGAATTCGAATGCCTGCCACCTGCGCTGCTAGGGTTTTCCAATTGACTAGAGAATTGGGCCACAAGTCCGACGGAGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCATCATCGCCGCCACCGGGACCGGCACCATCCCCGCTAATTTCTCCACCCTCAACGTCTCCTTCCGCAGCAGCGGCTCCACGCTGTCGGCACCGCCTTCCAAGTCGGCCCCGCACACCTTTCACGGCGCGCTCGCACTAGCTCACCACCCTTACGACGAAGCCTTTCAGCACCCCGCTTTACTTGGCTTCCACCCTCACGCTCACGCTCACCAGCAGCACCAACAGCACCAGCAGCAACAACTTCTTTCCGCCGATCAAATCGCGGAAGCGCTTCCCAGCGGCGGCGGTGACTCCGGCGACAGCTATCTCAGGAAACGCTACCGAGAAGATCTGTTCAAAGACGATAACATCAACACCCAATCACAGAACGAGAGCGGTGACGGTTCTTCGCCTAAAACTCCGAACCTACAGCTACCGAAGCAGCAGCCCCAGCAGCAAAACGAAGCTGGTTCTGGGCTTCTCAGGCCCACGAATATGCTACCCGCCACAGCGATGTGGGCCGTGGCGCCCGCTCCCGCGAGTGGACCTCCGGGCAGCACAATTTGGATGCTTCCGGTAACCGCGGCTTCTTCCGGTTCTGCTGCAGCTGCAGCTACCGCTTCAGCTTCTTCTTCTGGTGGTGGTGGTGGTGGTGGATCCTCTGCGAGTTCGGAGAGTCAGATGTGGCCTTTTCCTCAGAGTGGTTTCATGCCAAGGTTCAATCTTCCGAGTGCGCTTGAATTCCAAGGCGCACGTGCGGGTTCTCTGCAATTAGGGTCAATGTTAATGCCGCAGCAACCTTCTCAACATCTGGGTCTCGCCATGTCCGACTCCAACTTCGGCATGTTAGCTGCCCTTAATGCTTTCACAAGACCTGGTTTCAATATTAATTCCGACAATCATCATCCTCATCACCATCACCATCATCACCATCATCATCCCTTGGAGCATCAGCATCAGCATCAACATCAACATCAACCCAGTGAGAGTGGAGAAGATGCTCCTAACAGCTCCCAATGA 1581 0.5623 MELSDLQNNKQNITNTNNTNTKANTGPPPGGAAAAAAAAAAAGGGSGSGSAATHPRPHPHHHHQQSSSSHVVRPNPPSPFISSSTTSSSSNSSSSSSSASASSHIIDASLAIATRSDDSANKTQPLPTAVAAPSPAANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSFRSSGSTLSAPPSKSAPHTFHGALALAHHPYDEAFQHPALLGFHPHAHAHQQHQQHQQQQLLSADQIAEALPSGGGDSGDSYLRKRYREDLFKDDNINTQSQNESGDGSSPKTPNLQLPKQQPQQQNEAGSGLLRPTNMLPATAMWAVAPAPASGPPGSTIWMLPVTAASSGSAAAAATASASSSGGGGGGGSSASSESQMWPFPQSGFMPRFNLPSALEFQGARAGSLQLGSMLMPQQPSQHLGLAMSDSNFGMLAALNAFTRPGFNINSDNHHPHHHHHHHHHHPLEHQHQHQHQHQPSESGEDAPNSSQ* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1611 526 MobiDBLite consensus disorder prediction 141 155 - -
Vra10g1611 526 MobiDBLite consensus disorder prediction 68 101 - -
Vra10g1611 526 MobiDBLite consensus disorder prediction 1 101 - -
Vra10g1611 526 MobiDBLite consensus disorder prediction 481 526 - -
Vra10g1611 526 MobiDBLite consensus disorder prediction 394 418 - -
Vra10g1611 526 MobiDBLite consensus disorder prediction 488 506 - -
Vra10g1611 526 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 60 526 IPR005333 GO:0003700
Vra10g1611 526 MobiDBLite consensus disorder prediction 305 350 - -
Vra10g1611 526 PANTHER TRANSCRIPTION FACTOR TCP8 60 526 - -
Vra10g1611 526 Pfam TCP family transcription factor 143 275 IPR017887 -
Vra10g1611 526 MobiDBLite consensus disorder prediction 1 26 - -
Vra10g1611 526 MobiDBLite consensus disorder prediction 117 155 - -
Vra10g1611 526 MobiDBLite consensus disorder prediction 310 347 - -
Vra10g1611 526 MobiDBLite consensus disorder prediction 394 419 - -
Vra10g1611 526 ProSiteProfiles TCP domain profile. 144 198 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1611 Vra-Chr10 20673800 20676293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1611 141 466 TCP Transcription Factor Family AT1G35560 48.476 6.72e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra10g1611 TCP 9.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1611 - - vra:106776202 751.895