Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1607 ATGATGTCTGAAGATGCTGGATCTATGTTGGTAGTTTATGATGATCCCTCGGACCAACGCTCACTATCTTTGGATGATGCAAGCAGCACTGAGGAGTCACCCGATGAAACGAGGCTCTCCTTGGAAACAACACATGATGCTATTCCATACATTGGCCAAAGGTTTGCCACTCATGATGCTGCTTATGAATTCTATAGTGAATTTGCCAAAAGGAGTGGCTTCTCAATTAGACGTCACCGTACAGAAGGAAAAGATGGTGTTGGAAAAGGACTTACTAGGCGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGTCAAAACATCAACTGAAAGCAAACCTCAAAGAAATAGAAAGTCTTCTCGCTGTGGGTGTCAGGCTTACATGCGTATTAGCAAAACAACGGAATTTGGAGCTCCAGAATGGCGTGTGACTGGTTTTGCTAACCACCATAATCATGAACTTTTAGAACCAAACCAAGTTCGATTTCTCCCTGCATACAGAACTATCTCGGATGTTGACAAAAATCGAATACTAATGTTTGCCAAAACAGGAATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACTGAAAAAGACGTAAGGAATTTACTCCAGTCATTTAGGAAATTAGATCCAGAAGAAGAAAGCTTAGATTTATTAAGAATGTGCAGAAATATTAAGGAGAAAGATCCTAATTTTAAATTTGACTACACACTTGATGCAAACAATCGTTTGGAGAATATTGCTTGGTCATATGCTTCATCAATCCAATGGTATGATATCTTCGGTGATGCAGTGGTGTTTGATACAACACACCGGCTGACTGCTTTTGACATGCCACTAGGGATATGGGTTGGAATAAATAATTATGGAATGCCTTGCTTTTTTGGCTGCACACTTTTACGGGATGAAACCGTGAGGTCGTTTTCCTGGGCACTAAAGGCTTTCTTAGGGTTCATGAATGGAAAGGCTCCACAAACTATATTAACCGACCAAAATATATGTCTCAAAGAAGCACTATCCACAGAAATGCCTACAACAAAACACGCATTCTGCATATGGATGATAGTAGCAAAGTTTCCATCTTGGTTTAATGCTGTTCTAGGGGAACGGTATAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAGTCAGTTGAGGATTTTGATCTAGGTTGGAGGGAAATGGTTTGTTCTTTTGGGCTGCACTCCAATCGGCACATGGTTAATTTATATAGTTCACGCTCTCTTTGGGCGTTGCCATTTTTGAGAAGCCATTTTCTTGCTGGAATGACTTCAACTGGTCAGTCAAAGTCAATCAATGCTTTCATTCAACGATTTCTGAGTGCACAAACTCGCCTTGCACACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTTGCCTCAAAACAGGGGCCCCCATGGAATCACACGCTGCCACAATCCTCACTCCTTTTGCCTTTTCAAAGCTCCAAGAACAACTTGTACTGGCTGCACATTATGCATCTTTTCCAATTGAAGATGGTTTTCTTGTGAGGCACCACACCAAAGCTGAGGGAGGTCGAAAAGTTTATTGGGCCCCTCAAGAAGGAATTATAAGTTGTAGCTGCCATCAGTTCGAGTTCACTGGTATTCTTTGTCGGCATTCTCTTAGAGTTCTTTCAACAGGAAATTGCTTTCAGATTCCAGATGGATATCTTCCTATTCGATGGCGTCGCATAAGCATGCCCTCTTCTAAGCTTCTTCAAAGTGCGCCAAACGATCATGCCGAAAGAGTTAAGTTACTACAGAACATGGTTTCATCTCTGATGACAGAATCTGCTAAATCTAAGGAACGGTTAGATATTGCAACAGAACATGTTTCTATCCTTCTGTCTCGCTTAAGAGAGCAACCGATTTCTTTGCAAGGTGGTCGAGAGTCCCAGAATTAG 2028 0.4137 MMSEDAGSMLVVYDDPSDQRSLSLDDASSTEESPDETRLSLETTHDAIPYIGQRFATHDAAYEFYSEFAKRSGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDVDKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKEKDPNFKFDYTLDANNRLENIAWSYASSIQWYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCTLLRDETVRSFSWALKAFLGFMNGKAPQTILTDQNICLKEALSTEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFDLGWREMVCSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTSTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATILTPFAFSKLQEQLVLAAHYASFPIEDGFLVRHHTKAEGGRKVYWAPQEGIISCSCHQFEFTGILCRHSLRVLSTGNCFQIPDGYLPIRWRRISMPSSKLLQSAPNDHAERVKLLQNMVSSLMTESAKSKERLDIATEHVSILLSRLREQPISLQGGRESQN* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1607 675 Pfam MULE transposase domain 279 371 IPR018289 -
Vra10g1607 675 PANTHER PROTEIN FAR1-RELATED SEQUENCE 11 13 661 - -
Vra10g1607 675 ProSiteProfiles Zinc finger SWIM-type profile. 554 590 IPR007527 GO:0008270
Vra10g1607 675 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 661 IPR031052 GO:0006355
Vra10g1607 675 SMART 26again6 565 592 IPR006564 GO:0008270
Vra10g1607 675 MobiDBLite consensus disorder prediction 1 43 - -
Vra10g1607 675 Pfam FAR1 DNA-binding domain 63 156 IPR004330 -
Vra10g1607 675 Pfam SWIM zinc finger 561 588 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1607 Vra-Chr10 20641459 20646472 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra10g1607 MULE 2.3e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1607 - - pvu:PHAVU_006G220900g 1339.32