Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1600 ATGGAGAAGTACGAGCTCGTCAAGGATATAGGATCTGGGAATTTTGGTGTGGCAAGGCTCATGCGGCACAAAGAAACCAAGGAGCTAGTTGCCATGAAATACATTGAAAGGGGTCACAAGATTGATGAGAATGTTGCCAGGGAAATCATAAACCATAGAAGTCTTCGCCACCACAATATTATTCGGTTCAAGGAGGTGGTCTTGACTCCTACTCATCTGGGTATTGTTATGGAGTATGCAGCTGGTGGAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGTGAAGATGAGGGTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGCAAATCTGTCATCGAGACTTGAAGCTTGAAAACACCTTATTGGATGGCAGCCCTGCTCCAAGGCTCAAAATTTGTGATTTTGGTTACTCTAAGTCATCCCTGCTTCATTCAAGGCCTAAGTCAACTGTGGGAACCCCAGCCTACATTGCGCCTGAGGTTCTTTCACGCAGAGAATACGATGGAAAGCTAGCTGATGTATGGTCCTGTGGAGTGACTCTTTATGTAATGTTGGTGGGAGCATACCCATTTGAAGACCAAGACGATCCCAAAAATTTTAGGAAAACCATCAATAGAATTATGGCTGTTCAATACAAGATCCCCGACTATGTTCACATATCTCAAGACTGCAGACATATGCTATCTCGCATTTTTGTGGCAAATCCAGCTAGGAGAATTACCATTAAGGAAATCAAGTCCCACCCGTGGTTTTTAAAGAACTTGCCTAGAGAATTAACAGAAGTAGCTCAAGCTGCCTACTACAGAAAAGAAAATCCAACCTTTTCACTTCAGAGTATAGAAGACATCATGAATATTGTTGAGGAGGCCAAGATTCCACCACCGGCATCCAGGTCAGTTGGAGGATTTGGTTGGGGAGGAGAAGAAGATGAAGATGAAACAAAAGAAGCAGAGGTTGAAGCTGAGGAAGATGAGTATGAAAAGAGAGTCAAAGAAGCACAGGCAAGCGGGGAATTTCATGTTAGTTAG 1056 0.4366 MEKYELVKDIGSGNFGVARLMRHKETKELVAMKYIERGHKIDENVAREIINHRSLRHHNIIRFKEVVLTPTHLGIVMEYAAGGELFERICSAGRFSEDEGRYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTINRIMAVQYKIPDYVHISQDCRHMLSRIFVANPARRITIKEIKSHPWFLKNLPRELTEVAQAAYYRKENPTFSLQSIEDIMNIVEEAKIPPPASRSVGGFGWGGEEDEDETKEAEVEAEEDEYEKRVKEAQASGEFHVS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1600 351 MobiDBLite consensus disorder prediction 304 351 - -
Vra10g1600 351 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vra10g1600 351 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vra10g1600 351 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vra10g1600 351 PANTHER SERINE/THREONINE KINASE 2 345 - -
Vra10g1600 351 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1600 351 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2A-RELATED 2 345 - -
Vra10g1600 351 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1600 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vra10g1600 351 MobiDBLite consensus disorder prediction 315 330 - -
Vra10g1600 351 CDD STKc_SnRK2 3 259 - -
Vra10g1600 351 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1600 351 SUPERFAMILY Protein kinase-like (PK-like) 1 303 IPR011009 -
Vra10g1600 351 Coils Coil 325 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1600 Vra-Chr10 20614001 20616934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1600 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 42.963 1.62e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vra10g1600 Pkinase 1.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1600 K14498 - gmx:100812259 641.343