Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1598 ATGTGTTGTTTGGTTGCCACTCAAATGAGACAAGGTGAAGTCAATTCAGTTCGCGTTGATAAAGAAAATAACAGGGACTGGTTGCGGCATGCCAATGCTCATGAAAACTTCTCCTCCCAAGGGAAGTTTTTGAGCTCTAATTTTCTGTTCTCTGTTCCGCCCAAGAAGCCCCGCCACCAAGAACCGGACCCTGGGACTGCCGGGTTTGTTTTTCAACGAAGTGAAAATATTCAAGTTTCACAGAGAGTACAATTTGACAAGGCTTGGGATGCTCTTTCAAGTCTACAAAATTCTAGTAGGAACTATGTACAACCTGGAAAAAATGTCAATGTTAACTGGCAAAGTCATGAGAATACGAGAACAGCACCAATCCATGGAGGCTATCAGAATGACAACCGTATGTGTCCTGATGTCACTGACATTCCAGTTAGCAAAAATACTTCTTGGGGTTTGGATGGTTCATTGAACAATCATAATAAGTGCACAGGTCAAATCAACGAGTCTTCTAACTGCATGTCTGGAGATATTGATGATGATAACATACTTGAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAGTCGACCTGCACTCCTAAGCNNTCAATATCCAAGCTTCCTCCTGTAACACCNAATGCANATAAAGATGAATTTGCTAGACAGGGGGGTGATGTTTTGCCACCAGACCTGTGTTTAGATTGCATCCATGGGTACAAGCTAGGGCTTTGCCCTGAAGCAGCAATTCATTTGCAGGAATTGAAGGATAATCTAATTGCAATCTCTAATGAACTGCTCGACAATGGTGAAAACCTCAATTCTACACAGATATCAAAGCTTCGCCATGATAGGTCACAGTTGAATAATCAAATTCAGCAACTAGAAAAATATATTCAATCAAGTAATCTTAACGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCATCCACATCATATGTGTATGAAACACCTCAGCAAACTGGTGCCTGTAATGGATCCAAGCAATACGATACTCAGGTTTATATGGGTAATGGGACATGTGGTTCAACATTCCAGTCTCTTCCATCTTTTTCTGTAGACAATTATAGCACATCATCTGGTCCGTTGGAGCGTGAAGCGTTCATCCCAAAGATTGTCGAAGTTAATTACATTGAAGGTTCCGGAGACAAACGCTGGAGCAGCCACGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAGGTATTTGGAAATCATTCCTTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGTGGAAAGAGTCTGACTTATCAGTTACCGGCTCTTGTTTGTCATGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAGGATCAAATAATGCATTTACTGCAGTTAAATATACCAGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAGATCCTCCGAGAACTTAATTCTGATTACTGTAAATACAAGTTATTATATGTGACACCTGAAAAGGTTGTCAAAAGTGATAATCTTTTGCGACACTTAGAAAATTTACATTTTCGTGAGCTGCTTGCAAGGATTGTAATTGACGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTAAAACAGAAATTCCCAAATACTCCAGTTTTAGCTTTAACAGCTACAGCAACTGCTAGCGTAAAAGAAGATGTCGTGCAAGCACTTGGTCTTGTTAACTGTGTTGTTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCGAAGACCAAAAAGTGTTTGGAAGACATTGACAAATTCATTAGAGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTCGCTAGCAATTTACAGGAATGTGGACATAAATGTGCATTTTATCATGGTACCATGGATCCTGCTCAACGTGCCTTTGTTCAAAAGCAGTGGAGCAAAGATGAAATCAATATAATTTGTGCTACAGTAGCATTTGGAATGGGTATTAATAAACCCGATGTCCGCTTTGTAATTCACCATTCTCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGCCGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAATTATAGTGATTATATACGAGTCAAGCATATGATAAGTCAAGGAGCAATAGAGCAAAGTCCCATGACATCTGGATACAATCGTTCAAATATGATAAATCCTGGAAGCATACTAGAAACGAACACCGAAAACCTTATGCGAATGGTTAGTTATTGTGAAAATGATGTCGACTGTCGGCGCCTTCTGCAGCTTGTTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCACAAAACGTGTGATAATTGCTTGAAGATCACAAATTTCATTGAGAAGGATGTCACAGAGATAGCAAAGCAATTGGTTGAACTTGTTAAGCTAACGGGACAGAGGTTCTCATCATCTCATATATTAGAAGTCTATCGTGGTTCCTTTAGCCAAATGGTCAAGAAAAACCGTCATGAGACAGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGTATATTGCATCGTCTTGTTGTTGAGGATATTCTTGTGGAAGAAGTAAAGAAAAGTGATTATGGATCGGTATCGTCGATATTGAAGGTAAATGAGCTCAAGGTCTGTAATCTGTTTGCTGGGCACAGAATTATATTGAGATTTCCATCGTCTGTAAAGGCATTAAAACCAGGGAAATCTGATGTAACTCCAGCCAAGGGTTCTTTGACATCTGGGAAGCCGAATGTTATTCCAACTAACGCTCCTCAGCCTCAAACTGAAGTGGATTTGAATCTTTCAGCCAAGTTATACACTGCTCTGCGTATGTTGAGGACAACTCTTGTTAAAGAAGCTGGAGATAGTGTTTTTGCTTACCACATATTTGGTAATGCCACGTTGCAGCAGATGAGCAAGAAAGTGCCGAGAACGAAAGAAGAACTCCTCGATATCAATGGCATTGGCAAGGCAAAGGTAAGCAAGTATGGGGATGAGATACTGGAAACCATTGAGAATACCATAAATGAATATTACAAGTTGGACAAAGCCAGTAGCGGCAGCAAAGACAGTGCAGATTCTGCTAAAAGGAGACGAGAGTCAAATGGAGATCCATATGCAAATGCTGAGGACGATGACGCCCTCACCAATAGTACAGGTCGTTCTAAGAAAAGGACTATAAAGAGACAAAATAAAAAAGCTGTGATATATGATTCTGCAGAGGAAGATTATTTTTCTGGATGCCATGATGAAGACCTAGACTTTGACCTCATAGAAATTGATGCATTAGATCAGGTAACTTGTAAAAATGCTTCTGGGAGAGTACTACCTCAATGGACAACATCTTGA 3504 0.4015 MCCLVATQMRQGEVNSVRVDKENNRDWLRHANAHENFSSQGKFLSSNFLFSVPPKKPRHQEPDPGTAGFVFQRSENIQVSQRVQFDKAWDALSSLQNSSRNYVQPGKNVNVNWQSHENTRTAPIHGGYQNDNRMCPDVTDIPVSKNTSWGLDGSLNNHNKCTGQINESSNCMSGDIDDDNILENIDVDQIVEKYQSTCTPKXSISKLPPVTPNAXKDEFARQGGDVLPPDLCLDCIHGYKLGLCPEAAIHLQELKDNLIAISNELLDNGENLNSTQISKLRHDRSQLNNQIQQLEKYIQSSNLNEERQKSHFSASTAPSTSYVYETPQQTGACNGSKQYDTQVYMGNGTCGSTFQSLPSFSVDNYSTSSGPLEREAFIPKIVEVNYIEGSGDKRWSSHDFPWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALVCHGITLVISPLVSLIQDQIMHLLQLNIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVVKSDNLLRHLENLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVASNLQECGHKCAFYHGTMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMISQGAIEQSPMTSGYNRSNMINPGSILETNTENLMRMVSYCENDVDCRRLLQLVHFGEKFNSSTCHKTCDNCLKITNFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSFSQMVKKNRHETVSLHGAGKHLAKGEASRILHRLVVEDILVEEVKKSDYGSVSSILKVNELKVCNLFAGHRIILRFPSSVKALKPGKSDVTPAKGSLTSGKPNVIPTNAPQPQTEVDLNLSAKLYTALRMLRTTLVKEAGDSVFAYHIFGNATLQQMSKKVPRTKEELLDINGIGKAKVSKYGDEILETIENTINEYYKLDKASSGSKDSADSAKRRRESNGDPYANAEDDDALTNSTGRSKKRTIKRQNKKAVIYDSAEEDYFSGCHDEDLDFDLIEIDALDQVTCKNASGRVLPQWTTS* 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1598 1167 Gene3D - 610 828 IPR027417 -
Vra10g1598 1167 Gene3D - 383 609 IPR027417 -
Vra10g1598 1167 SMART RQC_2 835 944 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vra10g1598 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 751 IPR027417 -
Vra10g1598 1167 CDD DEXHc_RecQ 410 609 - -
Vra10g1598 1167 PANTHER DNA HELICASE RECQ FAMILY MEMBER 137 1135 - -
Vra10g1598 1167 Pfam HRDC domain 988 1056 IPR002121 GO:0003676
Vra10g1598 1167 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 411 886 IPR004589 GO:0004386|GO:0006310
Vra10g1598 1167 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 137 1135 - -
Vra10g1598 1167 Pfam Helicase conserved C-terminal domain 626 732 IPR001650 -
Vra10g1598 1167 Pfam RecQ zinc-binding 744 826 IPR032284 -
Vra10g1598 1167 SMART hrdc7 984 1066 IPR002121 GO:0003676
Vra10g1598 1167 SUPERFAMILY HRDC-like 987 1060 IPR010997 GO:0000166|GO:0044237
Vra10g1598 1167 Gene3D HRDC domain 983 1072 IPR044876 -
Vra10g1598 1167 Coils Coil 277 304 - -
Vra10g1598 1167 ProSiteProfiles HRDC domain profile. 984 1066 IPR002121 GO:0003676
Vra10g1598 1167 Pfam RQC domain 832 944 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vra10g1598 1167 SMART ultradead3 415 618 IPR014001 -
Vra10g1598 1167 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 541 550 IPR002464 -
Vra10g1598 1167 Gene3D - 833 941 IPR036388 -
Vra10g1598 1167 SMART helicmild6 652 733 IPR001650 -
Vra10g1598 1167 MobiDBLite consensus disorder prediction 958 976 - -
Vra10g1598 1167 CDD SF2_C_RecQ 610 742 - -
Vra10g1598 1167 Pfam DEAD/DEAH box helicase 421 589 IPR011545 GO:0003676|GO:0005524
Vra10g1598 1167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 627 788 IPR001650 -
Vra10g1598 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 876 IPR027417 -
Vra10g1598 1167 MobiDBLite consensus disorder prediction 1071 1091 - -
Vra10g1598 1167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 427 602 IPR014001 -
Vra10g1598 1167 MobiDBLite consensus disorder prediction 957 976 - -
Vra10g1598 1167 MobiDBLite consensus disorder prediction 1071 1111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1598 Vra-Chr10 20599489 20606932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1598 641 764 Eukaryotic Initiation Factors Gene Family AT3G19760 23.622 3.38e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1598 K10901 - gmx:100800006 1889.39