Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1591 ATGAAGATGTTGTTGCTACCCTTGATGTTTGCAGTGTTTTCTTGCATGAGTTTGAGTTCGGCAGCGCCTTCTCCATCCCCGACATCGACATGCCCCATGGACTTGAATTATGTGCTGAGAATCCCATGGAACAATTCTGTTTGCCACAACTTCCAAGAGAATTTGGCAGCAAGAAATGGAACAGATGCAAACACTTGTTGCATATCACTGTTGTCCCTCTTTGGCGTAGGACTTGCACAGCATCTCAAAGAGACTTCTCAGTTCCAACTCCCCAACCTTGCCACCTCAGTTTCGTGCATGCAAGACTTCCAATCGAAGATCTCTTCTCTCTCTCTCCCCGACAACCTTGTAGACTCCTGCTTTGACCCTCATCAGTTTGTGATCTCTCCCAACATCTGTGCTGGGATTCAAACAATCTCTGATTGGACCAAAAAGCTTGGTCAGTCCACCGCACTCAACACTGCTTGCAAACCGGATCTCACCGATCTCCCCCTCTGTGATGTGTGTGTGGGAGCTGGGTTACAGGTCAAGCAGGAGCTTATTTCCATAGATGGTAACACTTCGCACTCCATGGATTGTTTTTACTTTGCAATACTCTATGCTGCTGGGATTGTGAACGAGTTTGGACCTGAAAGCAATGGTGCCGTGACTTGTATTTTTAGCATGCCGGTTTATTCACGGGGAGGTTCTGGGGGAAAGAGTCACCAGGCTCTTGTTTTTGGGTTGACGGGAGCTGGGGTGGCTTTGCTGGTGATGTCTTCTCTGTTGGGGCTTTATGTGTGGTGCGACAGGAAGCACAGGAGGAAAAAGCTTGATACTTTTCAGTTTGATTTTGACCCCGAGGAACAAGGGTCTAGGCGTAGATTGAGACCTAATACGGGGTCCATTTGGTTCAAAATTGGGGAGCTTGAGAAAGCCACTGATAATTTTTCATCTAAGAACTTCATTGGCCGTGGTGGGTTTGGGTTGGTTTACAAGGGAACCTTGCCTGATGGGACTGTGGTGGCGGTTAAAAGGATCTTGGAATCTGATTTTCAAGGAGATGTGGAGTTCTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCATCGCAATCTGGTGCCTCTGAGAGGCTGTTGTGTGGCTGAGGAGAGTGAGAATTATGATGAAAGGGGAAGCCAAAGGTATCTTGTGTATGATTACATGCCAAATGGGAACCTGGAGGACCATCTGTTTGTGTCATCAGACTCTCCGAAAGCAAAGGGATCATTGACATGGCCTGAGAGGAAAAGCATAATCTTGGATGTGGCAAAGGGGTTGGCCTATTTGCACTATGGAGTTAAACCTGCAATTTTCCATAGGGATATCAAAGCCACCAATATTCTACTTGATGCGGATATGAGGGCAAGAGTTGCTGATTTTGGTCTTGCCAAACAAAGCAGAGAGGGTCAGTCTCATCTGACAACCAGAGTGGCTGGAACTCATGGATATCTAGCTCCAGAATATGCACTCTATGGTCAGCTCACTGAGAAGAGTGATGTGTATAGTTTTGGTGTAGTTGTTCTTGAGATTATGTGTGGGAGAAAGGCTCTTGACTTGTCTTCATCAGGATCACCAAGGGCATTCTTGATCACAGATTGGGCCTGGTCACTGGTAAAGGCTGGCAAGTTAGAAGAGGCTCTAGATAATTCCCTGGTGAAGGATGAGAACTTTCCTAGCTCAAATCCTAAGAGCATAATGGAGAGGTTTTTGCTGGTGGGGATTCTATGCTCCCATGTCATGGTTGCTTTGAGGCCAACAATTGCTGATGCTTTGAAGATGTTGGAAGGTGACATTGAGGTTCCACAAATCCCAGATCGCCCTATGCCTCTTGGCCACCCTGCCTTTTACAATGATGCCAGTACTTTTAGCATATCTCCAGCATTAAGTGGCCTCAAGTTGCAAACTGGAGACATGCTCAGGTCCATTAACGAGGGCTAA 1959 0.4661 MKMLLLPLMFAVFSCMSLSSAAPSPSPTSTCPMDLNYVLRIPWNNSVCHNFQENLAARNGTDANTCCISLLSLFGVGLAQHLKETSQFQLPNLATSVSCMQDFQSKISSLSLPDNLVDSCFDPHQFVISPNICAGIQTISDWTKKLGQSTALNTACKPDLTDLPLCDVCVGAGLQVKQELISIDGNTSHSMDCFYFAILYAAGIVNEFGPESNGAVTCIFSMPVYSRGGSGGKSHQALVFGLTGAGVALLVMSSLLGLYVWCDRKHRRKKLDTFQFDFDPEEQGSRRRLRPNTGSIWFKIGELEKATDNFSSKNFIGRGGFGLVYKGTLPDGTVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVAEESENYDERGSQRYLVYDYMPNGNLEDHLFVSSDSPKAKGSLTWPERKSIILDVAKGLAYLHYGVKPAIFHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKAGKLEEALDNSLVKDENFPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPAFYNDASTFSISPALSGLKLQTGDMLRSINEG* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1591 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Vra10g1591 652 CDD STKc_IRAK 316 603 - -
Vra10g1591 652 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 18 647 - -
Vra10g1591 652 Gene3D Phosphorylase Kinase; domain 1 280 394 - -
Vra10g1591 652 Pfam SPARK 27 194 IPR043891 -
Vra10g1591 652 Pfam Protein kinase domain 312 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1591 652 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Vra10g1591 652 Gene3D Transferase(Phosphotransferase) domain 1 395 609 - -
Vra10g1591 652 ProSiteProfiles Protein kinase domain profile. 310 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1591 652 SMART serkin_6 310 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1591 652 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 647 - -
Vra10g1591 652 SUPERFAMILY Protein kinase-like (PK-like) 294 634 IPR011009 -
Vra10g1591 652 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1591 Vra-Chr10 20535138 20538226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1591 26 647 Receptor kinase-like Gene Family AT1G11050 65.169 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vra10g1591 Pkinase 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1591 - - gmx:100806560 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1591 10 20535138 20538226 Vra7g2138 7 41074343 41078680 PCT