Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1586 ATGGGAAGAAAAGGTGGAGGAAGGTTTTTTGAAAAATCTCTCCGTCGCCGTATTGAGATCTGCACGTCCAAATACTCTACTGCCGAAGAAATCGCCAACCATCTCCGTTCAACTTATCCCGATTACCACAGAACCAAACAACAAACCCTAATTCGGTTTGTTCAGGAAGCTATTCATTCCATGGAGAAGCTGAATCACACTCCCACGCTTAAGTATTCCGATGACGGCAACATAGAACCCCAACGCGCGTCTCGAAAGCGTAAGAAGAACATTGACGAAGGTGAAGAAAGGCTGAAGAAAATGGAAGCTTTACACGTGCGAAGGAGGGTGCAGAGTTCTTCCGAGAGTAATGACGAGGAGAGTAATGACGAGGAGAGTAATGATGAGGAATCGGTGTCTGAGGACGCAATTTACGGTGAGAAGTTGGAACCTCAGTTTGATTTGATGAAGGAAATGCTAAGGATGTCATATACGCCAAAGAAGGTGGCGGCAGCAGCAACGGAAGAAAAGAACATTGAAATAGAGATGGGTAATATAAGTAAAGGCACGGAGATGGGTAATATAAGTAAAGTCACGGAGATGGGTAATAGAAGTAAAGCCACGGTTCTGAATGACGTGGGAGACCCATCTCTGCTTTCGGTTTCGGTTTCAAACGGCGAGGGGAAGAAAGATTGGCCTCGATTTAAGGATTTTGGTGGGATGAAAGAAGTTTTGGAGGAACTAAGAGAAGAGTTGATTGTACCTTTGGTTCATGGTGAAATTCTTAGAAAATTAGGAGGGAAGCCAAAGGCAGTTGGCATTTTATTGCAGGGTCCACCTGGATGTGGGAAGACCACACTTGCTCATGCTATAGCTAATGAGTCAGGTCTTCCTTACTATCGGATTTCAGCTACTGAACTAGTCTCTGGGGTATCAGGTGCATCTGAAGAAAATATTAGGGAATTTTTTGCTAAAGCTTACAGAACTGCACCTTCTATAGTCTTTATTGATGAGATTGATGCAATTGGTTCTAAAAGAGAGAATTTGCAGCGGGAAATGGAAAAACGAATGGTGATGCAATTAAGCACTTGCATGGATCAATCAAGTGCTGATAATGTTATTGTAATAGGAGCTACAAATAGGCCTGATGCTCTTGACCCTGCCTTAAGAAGAAGGTTTGATCGTGAAATTAACATTTGTGAACCCGATGAATCCGCCAGGAAGGAGATTCTATCTATTCTTACTTCTAATTTTAGATTTGATGGTTTATTTGATCTACATGAAATAGCCAAGTTTACATCAGGATTTGTTGGTGCTGATTTGGTAACTCTAGTTGATAAGGCTCTTCGATGGGCAACGAAGAGAATAATTAACGAAAGAATGAAGAGAGTAATTGACCAAAGGAGACATGAAATACCTGAACTCATGAGTGAGCATATTGAAGAATGGCGGAGGGAACCTCTGTCCACGGAAGAATTAGATGAGTTTGCCTTCATCAAAATCTCCGATTTTGAGCAAGCATTCAAAAAGGTACAACCTTCATTAAGAAGAGAAGGATTTGCTAGCATTCCTAAGGTAAAATGGGAAGACGTTGGGGGGCTTGATCATTTAAGAAAGGAGTTTGAACGATATATTGTAAGGCGTATAAAATATCCTGAAGATTATGAGGCGCTTGGGATTAATCTCGAGACTGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACATTGATTGCCAAAGCTGTTGCCGGTGAGGCAGGGGCTAGTTTTATCCATATTGAGGGTGCCCAACTTTTAAATAAATATGTTGGGGAAAGTGAGCTTGCCGTTCGAACATTGTTTAGCCGTGCAAGGTCATGTGCACCATGTATAATTTTCTTTGACGAGATTGATTCATTGACAAAAGAACGTGGTAAGGAGGGTGGTTGGGTTACTGAGCGACTGTTGAACCAGTTGCTTATCGAGTTGGATGGTGGAGAGCATCGTCACGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGATGATGGATCGAGCTCTCTTACGGCCGGGTAGATTTGGTAAACTTCTTTATGTTCCTCTACCTGGCCTTGATGAGCGAGTTTTGATATTGAAAGCTCTTGCAAGGACTATGACAATTGATGCCACTGTGGATTTGAGTGCGATTGCTAGAATGGAAGTTTGTGAAAACCTAAGTGGCGCTGATCTTCGTAAATTGATGAGTGAAGCGGCAATGGCTGCTTGGGATGAGAAAGATAAAACTGTCAAGAGTATTCATTTTGAGATGGCACTAAGTAAAATCTCGCCGTCAGTGTCTAACAGGGAAAAGCAGTATTATCAACGCTTGTCGGAGAGCTTTAAAGTGGCGTGA 2355 0.4234 MGRKGGGRFFEKSLRRRIEICTSKYSTAEEIANHLRSTYPDYHRTKQQTLIRFVQEAIHSMEKLNHTPTLKYSDDGNIEPQRASRKRKKNIDEGEERLKKMEALHVRRRVQSSSESNDEESNDEESNDEESVSEDAIYGEKLEPQFDLMKEMLRMSYTPKKVAAAATEEKNIEIEMGNISKGTEMGNISKVTEMGNRSKATVLNDVGDPSLLSVSVSNGEGKKDWPRFKDFGGMKEVLEELREELIVPLVHGEILRKLGGKPKAVGILLQGPPGCGKTTLAHAIANESGLPYYRISATELVSGVSGASEENIREFFAKAYRTAPSIVFIDEIDAIGSKRENLQREMEKRMVMQLSTCMDQSSADNVIVIGATNRPDALDPALRRRFDREINICEPDESARKEILSILTSNFRFDGLFDLHEIAKFTSGFVGADLVTLVDKALRWATKRIINERMKRVIDQRRHEIPELMSEHIEEWRREPLSTEELDEFAFIKISDFEQAFKKVQPSLRREGFASIPKVKWEDVGGLDHLRKEFERYIVRRIKYPEDYEALGINLETGFLLYGPPGCGKTLIAKAVAGEAGASFIHIEGAQLLNKYVGESELAVRTLFSRARSCAPCIIFFDEIDSLTKERGKEGGWVTERLLNQLLIELDGGEHRHGVFVIGATNRPEMMDRALLRPGRFGKLLYVPLPGLDERVLILKALARTMTIDATVDLSAIARMEVCENLSGADLRKLMSEAAMAAWDEKDKTVKSIHFEMALSKISPSVSNREKQYYQRLSESFKVA* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1586 784 Pfam ATPase family associated with various cellular activities (AAA) 560 688 IPR003959 GO:0005524|GO:0016887
Vra10g1586 784 Pfam ATPase family associated with various cellular activities (AAA) 267 392 IPR003959 GO:0005524|GO:0016887
Vra10g1586 784 Gene3D - 690 760 - -
Vra10g1586 784 Pfam Nucleolin binding domain 4 62 IPR031996 -
Vra10g1586 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 780 IPR027417 -
Vra10g1586 784 PANTHER AAA-FAMILY ATPASE 43 780 - -
Vra10g1586 784 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 43 780 - -
Vra10g1586 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 511 IPR027417 -
Vra10g1586 784 Pfam AAA+ lid domain 712 756 IPR041569 -
Vra10g1586 784 Gene3D - 517 774 IPR027417 -
Vra10g1586 784 CDD AAA 253 392 - -
Vra10g1586 784 ProSitePatterns AAA-protein family signature. 659 677 IPR003960 GO:0005524|GO:0016887
Vra10g1586 784 Gene3D - 219 393 IPR027417 -
Vra10g1586 784 CDD AAA 558 689 - -
Vra10g1586 784 Gene3D - 395 511 - -
Vra10g1586 784 MobiDBLite consensus disorder prediction 78 116 - -
Vra10g1586 784 SMART AAA_5 263 396 IPR003593 -
Vra10g1586 784 SMART AAA_5 555 691 IPR003593 -
Vra10g1586 784 MobiDBLite consensus disorder prediction 117 133 - -
Vra10g1586 784 ProSitePatterns AAA-protein family signature. 366 385 IPR003960 GO:0005524|GO:0016887
Vra10g1586 784 MobiDBLite consensus disorder prediction 65 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1586 Vra-Chr10 20494582 20499096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1586 492 782 Calmodulin-binding Proteins AT3G56690 43.729 2.68e-66 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1586 K14571 - gmx:100809594 1016.53