Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1573 ATGTCTCTAACAGGTCGTTCTCGTATCGTTGTGAATGGTGTCAGAAGAACAAGAACTTTTCACTATTTCTGGTGCCTGTACTGCCAAAGAACCGTGAGGATACCCTTTACAAACAACCACGGTTCTACATGCCCCTATTGCTTCCACCACCTCCGTTACGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACGTGCCAAATAACTTGCAACCTTCACCAGCTACTCAGCTTTTGCATAACTTGGCCCTCATTCTTGATCCACCTCTAAGGAGCGAAAATAACAACCATTTCAACACAACCACACATTGGGAAACAGAAAATGAACATGGTGCAGATCCTCAGGCTTGGATCACACTCCGATTTCCACGGCCAACTCGTGCACCTAGGCCTATTTCCCCACCACAAAACATGGTTCCTCCGACCAATGACACTGACACGTTATTAGATGACTTCATCGATGGGGTGATTCAGAACAATAACAGACCAGGGCCGCCTCCTGCAGCATCTTCTGCCATTGCAGCATTGCCATTGGTGAAACTGACACAAGCCCATTTGGGTAGTGACCCCAATTGCCCTATTTGCAAAGATGAGTTTGAGCTTGACATGGAAGCCAGAGAGTTGCCATGCAAGCATTTCTATCATTCTGACTGCATCACCCCTTGGCTGCGCATGCACAACACTTGCCCCGTGTGCCGCTACGAGCTACAAGGTGTGGTTACTCCTAATGCTAATTACAGTTTCCAAAGTGATGAGAATGACCTGAGGTTTGCGTTTGAGGATATCTCAAACAGCTTGAACTGGATTTGGAACCACTTGGCTTCATTGTGGCCTATTCGTTCAGTCCTAGATTGGACACGGTCCTACTTTGATTTCCAAGAAACTCGTCTTCGTGTTCGTCGAGGTAGTTCTTCTTGGTGGCGATCATTGTTCGATATGTAG 942 0.4692 MSLTGRSRIVVNGVRRTRTFHYFWCLYCQRTVRIPFTNNHGSTCPYCFHHLRYELDISRPRLLMNVPNNLQPSPATQLLHNLALILDPPLRSENNNHFNTTTHWETENEHGADPQAWITLRFPRPTRAPRPISPPQNMVPPTNDTDTLLDDFIDGVIQNNNRPGPPPAASSAIAALPLVKLTQAHLGSDPNCPICKDEFELDMEARELPCKHFYHSDCITPWLRMHNTCPVCRYELQGVVTPNANYSFQSDENDLRFAFEDISNSLNWIWNHLASLWPIRSVLDWTRSYFDFQETRLRVRRGSSSWWRSLFDM* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1573 313 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 21 307 - -
Vra10g1573 313 Pfam Ring finger domain 191 233 IPR001841 -
Vra10g1573 313 SMART ring_2 192 232 IPR001841 -
Vra10g1573 313 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Vra10g1573 313 CDD RING-H2_RNF126_like 192 233 - -
Vra10g1573 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
Vra10g1573 313 SUPERFAMILY RING/U-box 173 237 - -
Vra10g1573 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 21 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1573 Vra-Chr10 20413243 20414732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1573 1 295 C3H Transcription Factor Family AT1G68180 33.221 2.29e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1573 K11982 - gmx:100793656 439.499