Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1565 ATGGACAGTGCAATTAGAAGGATTGACGCGGCGATTAAGAGTAGCAGTGATTCAATTTTGGGAAAAGGAGAATACGGCGTCCGTGGATTTGATTCGGCGGTGGATAGTGCCATAAGGAGTAGGACGGCGTCAAATTCGGAAATATTTTCTGTTCATGGATTCGGTTGGACAGTGAAGAATGTCATCCAGAGTACCACTGCACCAAATTTCCAAACACACGACAGTGTTCGTAGTTTTGGTTGCGCGGTGGAGAATGCAATAAGGAGTGGGGCTGGGCCAAATCCCCCTCCTCTGCACAGTTTCGCTTCGGCGGTGGATAAAGCCATTTGCAGCAGAGTTGTTGCCGAAGCCGAAGTTGAAGGTGAAACCGAAGAGTCGCCCAACAGAGAGGGCTTCGTGGGATCATGGCAGAAGGGCCGCATGTTAGGGAAAGGCTCCTTCGGCACAGTCTACCAAGCCGTCAATGAAGATGGATGCTTTTTTGCTGTAAAGGAGGTGCCCTTGTTGGATCATAGAAGCGAGGGCAAACAGAGCATTTTCCAACTTCGGCAGGAAAGATCTCTTTTGAGTCAGTTCCAGCATGACAACATAATTCGATATCTAGGCACAGACAAGGATAATGATAAGCAGTATATCTTCCTCGAGATGGGAGCAAAAGGATCATTGGCAGTTCTCTATCAAAATTATCAATTAATGGACTCTCAAGTTTCTGCATATACAAGGCAAATTTTAAGCGGCTTGAAGTATCTTCATGATCGTCATGTGGTTCACAGGGACATCAAGTGTGCCAATATATTGGTTGATGCAACCGGGTCCATCAAGCTTGCAGATTTTGGTTTGGCAAAGATTACCAAGTTAAATGATGTTAAATCAATTGGAGGTTCCCTGAACTGGATGGCCCCTGAGGTTGTTAACTTGAGGAGTTGTGGATATGGGCTAGCAGCAGATATATGGAGCTTAGGATGCACAGTATTAGAGATGTTGACACGACAACCTCCTTACTACCATTTGGAAGAAATGCAAGTGATATTTCAAATCGGCGGTGGTGAACCTCCACCTGTTCCGGCATCGCTGTCGACAAATGCCCGAGATTTCATTCTTAAATGCTTACAAGCTGACCCGAACAAACGCCCACCTGTTGCTCAACTATTGGACCATCCGTTTGTAAACCTTTGCACCACTCTCAAATATGGAGAGCATAGTGAAGATGTATTCTTACGTTGA 1224 0.4567 MDSAIRRIDAAIKSSSDSILGKGEYGVRGFDSAVDSAIRSRTASNSEIFSVHGFGWTVKNVIQSTTAPNFQTHDSVRSFGCAVENAIRSGAGPNPPPLHSFASAVDKAICSRVVAEAEVEGETEESPNREGFVGSWQKGRMLGKGSFGTVYQAVNEDGCFFAVKEVPLLDHRSEGKQSIFQLRQERSLLSQFQHDNIIRYLGTDKDNDKQYIFLEMGAKGSLAVLYQNYQLMDSQVSAYTRQILSGLKYLHDRHVVHRDIKCANILVDATGSIKLADFGLAKITKLNDVKSIGGSLNWMAPEVVNLRSCGYGLAADIWSLGCTVLEMLTRQPPYYHLEEMQVIFQIGGGEPPPVPASLSTNARDFILKCLQADPNKRPPVAQLLDHPFVNLCTTLKYGEHSEDVFLR* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1565 407 Pfam Protein kinase domain 137 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1565 407 ProSitePatterns Protein kinases ATP-binding region signature. 142 164 IPR017441 GO:0005524
Vra10g1565 407 PANTHER BNAA02G34600D PROTEIN 34 390 - -
Vra10g1565 407 SMART serkin_6 136 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1565 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vra10g1565 407 Gene3D Transferase(Phosphotransferase) domain 1 134 403 - -
Vra10g1565 407 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 34 390 - -
Vra10g1565 407 ProSiteProfiles Protein kinase domain profile. 136 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1565 407 SUPERFAMILY Protein kinase-like (PK-like) 133 390 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1565 Vra-Chr10 20331730 20341846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1565 127 389 MAP Kinase Kinase Kinase AT4G08500 61.742 4.58e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra10g1565 Pkinase 1.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1565 - K13414 vra:106774995 738.413