Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1550 ATGGTAGAAATGAAGGGAGTGATGAATGCAATGCATGGGTTGAAACCAGTGTTGTTGATGGTGTTAGTGCAGATTGCATACACTGCTGTCAATGTGCTTTTCAAACTCGCCATAAACGACGGAATGAGTGTAAAAGTTGCTACAACATATCGTCTCGCTTTTGGATCTGCTTTCACTGTTCCTCTCGCTCTCGTTTCTGAAAGGAAGAAAAGACCAAAGATGACTTGGAGGGTGCTTTTCATGGCATTTCTTTGTGGATTATTCGGGGGAAGTTTATTTCAGAATCTTTTCTACGAGTCCTTGGCTTTAACATCAGCAACGTTTGCCTCCGCTCTCTACAATCTCATTCCAGCTATCACCTTTGTATTGGCCATTTCCTGCGGTTTGGAAAGGTTGAATTGGAGGGCAGCCGCAGGAAGGGCCAAGGTGTTGGGAACTATAATTGGGATTGGTGGGGCAATGGTGTTGACTTTTATCAAAGGTGCAGAAATTAATATCTGGCCCTTCCACATCAACCTTATGCATCCACGTCAGCACCAAGACAGCCACGTGGCACAGTTAAATTCTGACTCTAGCAATACATTGTTGGGAGCTCTTTGTTCCATATTAAGCTGCTTCTCTTTTTCTCTCTGGCTCACCATTCAGGCTAAGATGAGCAAAGAATACCCTTGTCACTATTCAAGCACGGCTCTGATGTCTACAGCAGGAGCAATACAGGCCGCTGCTTTTGGTTTCTGTGTTGAGAGAGATTTCAGCCAATGGAAGTTGGGTTGGAATATCAGGCTACTTGCAGTGGCTTATTCGGGAATCGTGGCCTCTGGAATAGTAGTTATTATTACTGCATGGTGCATACAAATGAGAGGGCCTCTTTTTGCGTCTGTTTTCAACCCCCTAATGCTTGTGCTTGTGGCTATTGCTGGTTCTTTGATGCTCAACGAGAATTTGTATGTAGGAAGTGTGGTTGGAGCAGTGCTGATTGTGTGTGGGTTGTATATGGTTCTGTGGGGTAAAAGTAAAGAGATGAAGAACATCACTCAGTTAGTGCCATCGGAGACCATCCGAGAAGCTGAAGCCGTAGAAGTTGTAGTCGTGTCCACCCCAATGGATCATGATAAATGTGACCACAACAACCGAAGCGAAATCACTGCCATTACAAGGAATCTTGACAAAGATTGTGAGGATTTGACAAAAAAATAA 1197 0.4419 MVEMKGVMNAMHGLKPVLLMVLVQIAYTAVNVLFKLAINDGMSVKVATTYRLAFGSAFTVPLALVSERKKRPKMTWRVLFMAFLCGLFGGSLFQNLFYESLALTSATFASALYNLIPAITFVLAISCGLERLNWRAAAGRAKVLGTIIGIGGAMVLTFIKGAEINIWPFHINLMHPRQHQDSHVAQLNSDSSNTLLGALCSILSCFSFSLWLTIQAKMSKEYPCHYSSTALMSTAGAIQAAAFGFCVERDFSQWKLGWNIRLLAVAYSGIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAIAGSLMLNENLYVGSVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIREAEAVEVVVVSTPMDHDKCDHNNRSEITAITRNLDKDCEDLTKK* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1550 398 PANTHER WAT1-RELATED PROTEIN 14 370 IPR030184 GO:0016021|GO:0022857
Vra10g1550 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 149 - -
Vra10g1550 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 256 339 - -
Vra10g1550 398 Pfam EamA-like transporter family 15 156 IPR000620 GO:0016020|GO:0016021
Vra10g1550 398 Pfam EamA-like transporter family 196 334 IPR000620 GO:0016020|GO:0016021
Vra10g1550 398 PANTHER WAT1-RELATED PROTEIN 14 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1550 Vra-Chr10 20233890 20236315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1550 14 391 Nodulin-like Gene Family AT1G25270 39.947 3.45e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1550 - - gmx:100798755 654.825