Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1539 ATGAAGAATGTCTGCAATGTGGTGCAGGCCATGAAACCCACCCTGCTAATGCTGGTGGTGCAAGTAGCATTTGCCGGTGTTAATATCTTCTACAAGCTTGCCGTCAACGACGGCATGAACTTGAAGGTCATTGTTGCTTACCGTTTTCTATTTGCCACCATTTTCATTGCCCCAGTTGCTATCATTCTTGAAAGGAAGAAGAGGACAAAGATGAATTGGACCATACTGTTTCAGTCATTTCTTTGCGGCTTATTTGGGGGATCTTTAGCTCAGAATTTCTACTTGCAAGCTCTGTCCTTAACATCTGCAACATTTGCATCTGCAATGGCTAATCTTGTACCAGGCATAACCTTTATCATGGCCGTTTGCTTTGGTTTGGAAAGATTGAATTTGAGAACATCAGGAAAGGCAAAAATAATGGGTACATTAATTGGAATTGGTGGAGCAATGGTTCTTACATTCGTTAAAGGTAAAGATATTGAGATAGGAACATTTCACTTTAACCTTTTGCCTGAGAAGGGTGGACAGCCACCGGTGAAGGCTACCGCCGGCGGTGCCAAGACCGTCATGGGTGCTTTGTGCGCTCTGGCTAGTGGAGTCAGTTATGCGTTCTGGCTCATCATTCAGGCGAAAATGAGTGAAAGATACCCTCATCCCTACTCCAGCACAGCGTTGATGTCACTGTGGGGAGCATTAGTGTCCATCATGTTTGCACTTTTCGTTGAGAGGGACTGGAACCAGTGGAGGTTGGGTTGGAATATTAGGCTTTGGACTGCAGCATATGCGGGTATTGTGGTTTCTGGGATTATGGTGGTTGTGATTTCATGGTGCATCCGCATGAGAGGCCCGTTATTTGCCTCTGTTTTTAACCCTCTGATGCTTGTGATAGTGGCCTTGGCTGGTTCTACCATGTTGAAGGAGAAGCTACACCTTGGATGCATTATTGGAGCAGTGCTGATTGTGTGTGGCTTATACATGGTTTTATGGGGTAAAAGTAAAGAGATGAAGAAAAATAATCAATTGGTGCCACCACATAATACCCATGAGGATGAGTTTGATAGGGTGGAAGTAATAGTTAGGGATGAAGTAGAAGATAAAAGCAACCAAAAGGAAAGAGATAAAAATGGTGAAAAAGTAAGTGGGGATTACCACGAAGATCGAAAGCTAGAGCTGAATTCACAGAGTAACCAGCTTCAGGTAGGGTTCTACTCCAACACTTGTCCTCAGGTAGATTCCATTGTCCGTGATGTTGTTAGAGAAGCTGCTCTCTCTGATACCAACATGGCTGCTGTTTTGCTCAGACTTCATTTTCATGACTGCTTTGTTGAGGGTTGTGATGGTTCAATTCTGATTGAGAATGGTCCAGAATCAGAGAGACACGCATTTGGACATCAAGGAGTTAGAGGGTTTGATGTGATAGAAAAAGCCAAGGCAGAATTGGAAGGGTCTTGTCCTGGTGTGGTTTCTTGTGCAGACATAGTGGCATTGGCAGCTAGAGAGGCTATTGTCTTGGCGAATGGACCAACATATGATGTTCCAACAGGGAGGAGAGATGGGTTGGTTTCAAATGTTTCTCTTGCAGATGACATGCCAGATGTTAGTGATTCAATTGATCTACTCAAGACCAAGTTTCTGAACAAGGGTCTCTCAGTGAAAGACCTTGTTCTTCTCAGTGGTGCACATACAATTGGAACCACAGCATGCTTCTTTATGACTAAAAGATTGTATAACTTTTTTCCAAGTGGTGGAGGATCAGACCCATCAATTAGTCCAAATTTTCTCCCACANTTGCANGCAAAGTGCCCTCAGAATGGAGATGTTAATGTTAGGCTAGCCATTGACGAGGGGAGTGAACAGAATTTTGACGTACATATTCTGAAGAACATAAAGGAAGGTTTTGCTGTGTTAGAATCTGATGCCAGACTNAATGATGACATAGCCACCAAGAATGTCCTTGACTCTTACTTTTCTCCCTTTGGTCCAATGTTTGAGCCTTCTTTTGAAGCTGATTTTGTCGATTCATTCGTGAGGATGGGCCAAATTGATGTCAAGACAGGTTTCCTTGGAGAAATCAGGACAGTGTGTTCACAATTCAATTGA 2100 0.4329 MKNVCNVVQAMKPTLLMLVVQVAFAGVNIFYKLAVNDGMNLKVIVAYRFLFATIFIAPVAIILERKKRTKMNWTILFQSFLCGLFGGSLAQNFYLQALSLTSATFASAMANLVPGITFIMAVCFGLERLNLRTSGKAKIMGTLIGIGGAMVLTFVKGKDIEIGTFHFNLLPEKGGQPPVKATAGGAKTVMGALCALASGVSYAFWLIIQAKMSERYPHPYSSTALMSLWGALVSIMFALFVERDWNQWRLGWNIRLWTAAYAGIVVSGIMVVVISWCIRMRGPLFASVFNPLMLVIVALAGSTMLKEKLHLGCIIGAVLIVCGLYMVLWGKSKEMKKNNQLVPPHNTHEDEFDRVEVIVRDEVEDKSNQKERDKNGEKVSGDYHEDRKLELNSQSNQLQVGFYSNTCPQVDSIVRDVVREAALSDTNMAAVLLRLHFHDCFVEGCDGSILIENGPESERHAFGHQGVRGFDVIEKAKAELEGSCPGVVSCADIVALAAREAIVLANGPTYDVPTGRRDGLVSNVSLADDMPDVSDSIDLLKTKFLNKGLSVKDLVLLSGAHTIGTTACFFMTKRLYNFFPSGGGSDPSISPNFLPXLXAKCPQNGDVNVRLAIDEGSEQNFDVHILKNIKEGFAVLESDARLNDDIATKNVLDSYFSPFGPMFEPSFEADFVDSFVRMGQIDVKTGFLGEIRTVCSQFN* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1539 699 ProSitePatterns Peroxidases proximal heme-ligand signature. 553 563 IPR019793 -
Vra10g1539 699 PANTHER WAT1-RELATED PROTEIN 12 363 IPR030184 GO:0016021|GO:0022857
Vra10g1539 699 ProSiteProfiles Plant heme peroxidase family profile. 397 699 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 CDD secretory_peroxidase 397 698 IPR033905 GO:0004601|GO:0042744
Vra10g1539 699 PANTHER WAT1-RELATED PROTEIN 12 363 - -
Vra10g1539 699 ProSitePatterns Peroxidases active site signature. 429 440 IPR019794 GO:0004601
Vra10g1539 699 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 156 - -
Vra10g1539 699 Gene3D Peroxidase, domain 2 531 678 - -
Vra10g1539 699 SUPERFAMILY Heme-dependent peroxidases 397 699 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 Pfam Peroxidase 414 655 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 PRINTS Haem peroxidase superfamily signature 429 443 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 PRINTS Haem peroxidase superfamily signature 488 505 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 PRINTS Haem peroxidase superfamily signature 506 518 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 PRINTS Haem peroxidase superfamily signature 553 568 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 Pfam EamA-like transporter family 190 328 IPR000620 GO:0016020|GO:0016021
Vra10g1539 699 Pfam EamA-like transporter family 12 153 IPR000620 GO:0016020|GO:0016021
Vra10g1539 699 PRINTS Plant peroxidase signature 407 426 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 PRINTS Plant peroxidase signature 431 451 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 PRINTS Plant peroxidase signature 468 481 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 PRINTS Plant peroxidase signature 487 497 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 PRINTS Plant peroxidase signature 506 521 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 PRINTS Plant peroxidase signature 552 564 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 PRINTS Plant peroxidase signature 628 645 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 PRINTS Plant peroxidase signature 673 686 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1539 699 SUPERFAMILY Multidrug resistance efflux transporter EmrE 229 333 - -
Vra10g1539 699 Gene3D - 401 699 - -
Vra10g1539 699 MobiDBLite consensus disorder prediction 363 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1539 Vra-Chr10 20148582 20157041 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1539 390 699 Peroxidase AT1G77100 57.051 1.44e-110 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1539 - K00430 vra:106774988 1348.18