Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1533 ATGGAGGGACGAAGTTTAAACTCTCTAATGTTTACTTTGCTTGGTTTGACTATTGTGAACACAGTAGGAGTTAGTGGGCAAAAGACACGTGTGGGGTTCTATTCCCGCACGTGTCCCCGCGCTGAGTCCATCGTTAAGTCCACTGTTCGAGACCATCTTAAGTCCGATCCTAGTTTGGCAGCAGGGTTGCTTCGGTTGCACTTCCATGATTGCTTCGTGCAAGGTTGTGATGCTTCCGTTCTCATCGAGGGTCCTCAAACTGAGAGAACAGCATTGCCAAACCTTAGTTTAAAAGGATTTGAGGTTATTAATGATGCTAAGACACAGCTCGAGGCTGTATGCCCCGGCGTTGTGTCATGTGCTGACATTCTTGCTCTTGCAACTCGTGATTCTGTCGACCTTAGTGATGGACCGAGTTGGAAAGTGCCTACTGGACGTAGAGATGGACGCATATCACAGGCTTCAGAAGCGAATAACTTGCCTTCTCCTTTCGACTCTGTTGCTATTCTGACGCAGAAGTTTGCAGCAAAGGGTCTCAACACGCAAGACCTCGTCGTCCTTTCTGGTGGACATACAATTGGTACAACAGCTTGCCTGTTCTTCAGGCACAGACTGTACAACTTTACTGAAAATGGTCCTGACCCTTCCATCGACCCTACATTTCTTCCCACACTACGGGCACAGTGCCCCCAAAATACAGGTGCTCAAAACCGTGTTGCATTGGATACAGGCAGTGAATTCGAAGTTGATAGATCTTACTTTAAAAATTTGAAGAACGGACGTGGAATTTTGCAGTCTGATCAATTGCTTTGGACTGATGCTTCCACAAAGACATTTGTGGAAGCGTACTCCGACTCAGCCTTACGTTTCAAATCGGACTTTGCAAAGTCTGTGGTGAAGATGGGCAACACTGAGCTGAAAACGGGTTCTGATAGTGAAATTCGCACCATATGTTCTGCCATTAACTAG 969 0.4654 MEGRSLNSLMFTLLGLTIVNTVGVSGQKTRVGFYSRTCPRAESIVKSTVRDHLKSDPSLAAGLLRLHFHDCFVQGCDASVLIEGPQTERTALPNLSLKGFEVINDAKTQLEAVCPGVVSCADILALATRDSVDLSDGPSWKVPTGRRDGRISQASEANNLPSPFDSVAILTQKFAAKGLNTQDLVVLSGGHTIGTTACLFFRHRLYNFTENGPDPSIDPTFLPTLRAQCPQNTGAQNRVALDTGSEFEVDRSYFKNLKNGRGILQSDQLLWTDASTKTFVEAYSDSALRFKSDFAKSVVKMGNTELKTGSDSEIRTICSAIN* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1533 322 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Vra10g1533 322 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Vra10g1533 322 ProSiteProfiles Plant heme peroxidase family profile. 28 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 CDD secretory_peroxidase 30 321 IPR033905 GO:0004601|GO:0042744
Vra10g1533 322 Pfam Peroxidase 45 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 SUPERFAMILY Heme-dependent peroxidases 30 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PANTHER PEROXIDASE 25-RELATED 10 320 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 Gene3D - 32 322 - -
Vra10g1533 322 Gene3D Peroxidase, domain 2 161 301 - -
Vra10g1533 322 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g1533 322 PANTHER PEROXIDASE 10 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1533 Vra-Chr10 20103398 20104548 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1533 13 322 Peroxidase AT2G41480 59.177 1.87e-137 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1533 K00430 - gmx:100783523 462.611