Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1529 ATGGAGAGAGTGAATTCGTCTTTTATGAGTTCCTTTTTTGTTTGGGCAATTTTGGTGCTTGATTTGGTACTTAAGGCTTCTGGCAATCAGGAAGGCGATGCCCTGAATGCATTGAAGAGCAGCTTGCTTGATCCTAACAATGTTCTTCAAAGCTGGGATGCTACTCTTGTCAATCCCTGCACTTGGTTTCATGTTACTTGCAATAGTGATAACAGTGTGACTCGTGTTGATCTTGGAAATGCAGACCTTTCTGGTCAACTGGTCTCGCAACTTGGTCAGCTCACAAATTTACAGTACTTGGAACTTTATAGTAATAATATAACTGGAAAAATTCCAGAGGAGCTTGGGAACTTGACAAACTTGGTCAGCTTGGATCTGTACTTGAACAATTTAACTGGTTCTATACCAACTACGCTGGGCAACCTTGCAAAACTACGTTTCCTGCGTCTCAACAATAATACCTTGACGGGAGGCATACCCATGTCTTTGACAAATGTTTCTTCTCTGCAAGTTCTTGATCTCTCGAACAACCGTCTAACAGGGAATATCCCAGTGAATGGTTCATTTTCATTGTTTACCCCCATCAGTTATCAAAATAATCCTGGCTTGATACAGCCAAAAAACGCTCCATCTCCAGCTTCTCCAACTCCACCACCAGCTTCTTCAGGAAATAGTAACACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAGAAGGAAACCTCAGGATCATTTCTTTGATGTTCCCGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAACTTAAAAGGTTTTCGCTACGTGAGCTGCAAGTTGCCACTGATAACTTTAGTAACAAACACATTCTGGGTAGAGGTGGATTCGGAAAGGTTTATAAAGGACGCTTAGCTGATGGATCTCTTGTGGCAGTGAAAAGGCTTAAAGAGGAACGTACGCAGGGTGGGGAGCTCCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTATGCATCGTAATTTGCTTCGGCTTCGTGGTTTCTGTATGACACCTACTGAACGATTGCTTGTGTATCCTTTCATGGCTAATGGAAGTGTAGCATCGTGTTTACGAGAACGTCAAGAGTCTCAACCACCACTTGGCTGGCCAGAACGGAAGCGTATTGCTCTGGGTTCTGCGAGGGGGCTTGCTTATTTACATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCAGCAAATATTTTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTCTAGCAAAACTTATGGATTATAAAGATACTCACGTTACTACTGCTGTACGTGGAACAATTGGACATATAGCGCCTGAGTACCTTTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTCATAACTGGACAAAGGGCTTTTGATCTAGCTCGACTTGCCAATGATGACGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTGGTAGATGCAGATTTACAGGGAAATTATATTGATGAGGAGGTAGAGCAATTAATCCAAGTGGCACTGCTATGCACACAGGGCTCTCCTATGGAAAGACCAAAGATGTCTGAAGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAGAAATGGGAGCAATGGCAGAAAGACGAGACCTTCCGGCAAGACTTCAACAACAACATTCATCCCCCTAATGCAAATTGGATAGTAGATTCAACTTCCCACATCCAACCAGATGAACTGTCAGGTCCTAGATGA 1851 0.4333 MERVNSSFMSSFFVWAILVLDLVLKASGNQEGDALNALKSSLLDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGQLVSQLGQLTNLQYLELYSNNITGKIPEELGNLTNLVSLDLYLNNLTGSIPTTLGNLAKLRFLRLNNNTLTGGIPMSLTNVSSLQVLDLSNNRLTGNIPVNGSFSLFTPISYQNNPGLIQPKNAPSPASPTPPPASSGNSNTGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAMHRNLLRLRGFCMTPTERLLVYPFMANGSVASCLRERQESQPPLGWPERKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDRKLETLVDADLQGNYIDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKDETFRQDFNNNIHPPNANWIVDSTSHIQPDELSGPR* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1529 616 MobiDBLite consensus disorder prediction 202 226 - -
Vra10g1529 616 SUPERFAMILY L domain-like 30 195 - -
Vra10g1529 616 SMART LRR_sd22_2 166 187 - -
Vra10g1529 616 SMART LRR_sd22_2 94 117 - -
Vra10g1529 616 SMART LRR_sd22_2 118 144 - -
Vra10g1529 616 Pfam Leucine Rich Repeat 168 184 IPR001611 GO:0005515
Vra10g1529 616 SUPERFAMILY Protein kinase-like (PK-like) 271 567 IPR011009 -
Vra10g1529 616 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1529 616 Pfam Protein kinase domain 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1529 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 616 - -
Vra10g1529 616 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Vra10g1529 616 Gene3D Transferase(Phosphotransferase) domain 1 369 586 - -
Vra10g1529 616 PANTHER BNAA08G11770D PROTEIN 11 616 IPR031048 GO:0004675|GO:0005102|GO:0006468
Vra10g1529 616 ProSiteProfiles Leucine-rich repeat profile. 168 190 IPR001611 GO:0005515
Vra10g1529 616 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Vra10g1529 616 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Vra10g1529 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Vra10g1529 616 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Vra10g1529 616 Gene3D Ribonuclease Inhibitor 27 210 IPR032675 -
Vra10g1529 616 ProSiteProfiles Protein kinase domain profile. 292 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1529 Vra-Chr10 20070185 20077278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1529 1 616 Receptor kinase-like Gene Family AT4G33430 78.496 0.0 986
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vra10g1529 Pkinase 5.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1529 K13416 - gmx:100800522 1122.84