Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1523 ATGGATGTTCTCAGATTCACCTCAAACCTTAGCACCACTACCATGCTTCCAATCTCAAAAAAACATGAAACACAACCTCCTCGTATAAGGTTTTCTGTTTCATGCAGAGCCACGAAACAGCAGGCATGTGTGGAGGAGAACTTGTACAAGGTACTGAGTTTGAGTCCCATGAGTGCAACCACAGATGACATAAAGAAAGCGTACAGATCAATGGCTCTTCAGTACCACCCCGACGTCTGCCATGACGGTTCCAAGAAAGAAGAGTTGACCAGGATGTTTGTGCAGCTCAACGCCGCCTACACCACCTTGTCCAACCCACAGCTTCGAGCGGATTATGATTATGAGTTGGGTTTGAGAAGCGAGAAAAGTGTTGGTGATGAGAGTTGGAGATGTAGGTGGCAGGAGCAGGTGGTTGAGTTGAAGAGAAGGTCTCACACGCGTATGGCACAGAGGAACGGATCCTGGGGCTCTAGAGTCAGAGCACGAAACATGAACTGA 498 0.4819 MDVLRFTSNLSTTTMLPISKKHETQPPRIRFSVSCRATKQQACVEENLYKVLSLSPMSATTDDIKKAYRSMALQYHPDVCHDGSKKEELTRMFVQLNAAYTTLSNPQLRADYDYELGLRSEKSVGDESWRCRWQEQVVELKRRSHTRMAQRNGSWGSRVRARNMN* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1523 165 PRINTS DnaJ domain signature 50 68 IPR001623 -
Vra10g1523 165 PRINTS DnaJ domain signature 68 83 IPR001623 -
Vra10g1523 165 PRINTS DnaJ domain signature 88 108 IPR001623 -
Vra10g1523 165 ProSiteProfiles dnaJ domain profile. 47 116 IPR001623 -
Vra10g1523 165 SUPERFAMILY Chaperone J-domain 43 112 IPR036869 -
Vra10g1523 165 CDD DnaJ 47 105 IPR001623 -
Vra10g1523 165 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 14 164 - -
Vra10g1523 165 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 14 164 - -
Vra10g1523 165 Pfam DnaJ domain 47 113 IPR001623 -
Vra10g1523 165 SMART dnaj_3 46 108 IPR001623 -
Vra10g1523 165 Gene3D DnaJ domain 33 141 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1523 Vra-Chr10 20027430 20028188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1523 49 113 C2H2 Transcription Factor Family AT1G74250 43.284 2.18e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1523 - - var:108323614 253.447