Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1522 ATGGATGTTCTAACAATAGCCTCAACTCTCACCATTTCCAAACCCTTTCAAACGCTCTCACTCCCAAAGATACACCACACACCACCTCCTCCTCCCACGCGCTTCTCGGTTTCATGCAGAGCGACCAAGCAGCAGCTTCGAGGTGTGGAAGACAACCTGTACAAGATTCTAAGTTTGAGTCCCAACAGCGCCACCGCCGACGACATAAAGAAAGCGTACAGATCAATGGCTCGCCAGTACCACCCGGATGTGTGCCATGATAGTTCCAGGAAAGAGGAGTTGACGAGGATGTTTGTGCAACTGAACGCGGCTTACACCACCTTGTCCAATCCAAGGCTTCGAGCAGAGTATGACTACGAACTGGGTTTGAGAAGCAGAATGGGCGTTGGTGACGAGAGTTGGAGAATGAGATGGATGGAGCAACTGGCCGAGTTGAAGAGAAGATCTCACAAGCGTATGCAACGAAATCATGGATCGTGGGGCACCAGAGTCAGAGCACAAACCGTGAACTCAAATTAG 519 0.5048 MDVLTIASTLTISKPFQTLSLPKIHHTPPPPPTRFSVSCRATKQQLRGVEDNLYKILSLSPNSATADDIKKAYRSMARQYHPDVCHDSSRKEELTRMFVQLNAAYTTLSNPRLRAEYDYELGLRSRMGVGDESWRMRWMEQLAELKRRSHKRMQRNHGSWGTRVRAQTVNSN* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1522 172 SMART dnaj_3 51 113 IPR001623 -
Vra10g1522 172 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 8 170 - -
Vra10g1522 172 MobiDBLite consensus disorder prediction 149 172 - -
Vra10g1522 172 ProSiteProfiles dnaJ domain profile. 52 121 IPR001623 -
Vra10g1522 172 SUPERFAMILY Chaperone J-domain 46 117 IPR036869 -
Vra10g1522 172 Pfam DnaJ domain 52 118 IPR001623 -
Vra10g1522 172 PRINTS DnaJ domain signature 55 73 IPR001623 -
Vra10g1522 172 PRINTS DnaJ domain signature 73 88 IPR001623 -
Vra10g1522 172 PRINTS DnaJ domain signature 93 113 IPR001623 -
Vra10g1522 172 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 8 170 - -
Vra10g1522 172 CDD DnaJ 52 110 IPR001623 -
Vra10g1522 172 Gene3D DnaJ domain 38 157 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1522 Vra-Chr10 20021047 20021830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1522 54 118 C2H2 Transcription Factor Family AT1G74250 38.806 5.87e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1522 - - vun:114187063 312.768