Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1519 ATGGCAGCTGCAACATCTGGTGCTGTGTTAAATGGGTTGGGATCTTCCTTCTTGAGTGGAGGAAGCAGGAGCCAAACCCTTCTGGCCACTTCTATTGGAGGCAAAGTCGGTGTTGCAGTTAGTCCTAGAAGACTCATTGTGGTAGCTGCGGCAGCACCAAAGAAGTCATGGATCCCTGGTGTTAGAGGTGGTGGCAATCTCGTCGACCCAGAATGGCTTGATGGATCGCTACCAGGTGACTTTGGTTTTGACCCACTGGGCCTGGGGAAGGACCCGGCATTCCTGAAATGGTACAGAGAAGCTGAGCTGATTCATGGGAGGTGGGCAATGGCTGCAGTTTTAGGTATCTTTGTAGGGCAGGCCTGGAGTGGAGTGCCATGGTTTGAGGCTGGAGCTGACCCTAATGCAATTGCTCCTTTTTCCTTTGGTTCTCTTTTGGGAACCCAGTTGATTCTTATGGGATGGGTTGAGAGCAAGAGATGGGTGGATTTCTTCAACCCAGACTCACAGTCAGTGGAATGGGCCACTCCATGGTCAAAAACTGCTGAGAACTTTGCCAATGCTACTGGTGAACAAGGGTACCCAGGAGGCAAATTCTTTGACCCTTTGGGCTTCGCTGGTACTCTCAAGGATGGAGTTTACATCCCGGATACAGAGAAGCTGGAAAGATTGAAATTAGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCCATGCTGATTTTCTACTTTGAGGCTGGACAAGGAAAGACCCCACTAGGCGCACTTGGCTTGTAA 777 0.5006 MAAATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAAPKKSWIPGVRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1519 258 Pfam Chlorophyll A-B binding protein 70 246 IPR022796 -
Vra10g1519 258 Gene3D Chlorophyll a/b binding protein domain 70 257 - -
Vra10g1519 258 SUPERFAMILY Chlorophyll a-b binding protein 67 258 - -
Vra10g1519 258 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 1 258 - -
Vra10g1519 258 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 258 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1519 Vra-Chr10 20004125 20005504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1519 1 258 Chloroplast and Mitochondria Gene Families AT1G15820 82.692 5.81e-154 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1519 K08917 - gmx:100527463 500.36