Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1515 ATGAATATTTCATTCATTATCAATGTGGTTCTTCTGCTTGCAATTATACTGCTCTTGCTGCTTTACTACAACACATACACGAGGCTGAATAAAATAGTGAAGGGGCAGATTCACACAGTCATAGAAAAAGAGGATGACGTGGAGATCGGTGTTGAAAAGAAGATAGAGATAGGAGAGGGGACAGTGATTATGACAGTGGAACAGAGAAAGGGGCTGATATTCTTTAATGATAACCAGAAATTTCAAATGGGTGAACTTCTTAGAGCTTCTGCTGAGCCTCTGGGTCATGGGATCTTGGGAAACAGTTATAAGGCTATGCTGAATGGTGGACCTACCATTGTCGTCAAAAGGCTAAGGGACTTGAAGCCATTTACAAAGGAGGAATTTGAAAAGATAGTGAATGCGATTGCTGATATGAAGCACCCCAATTTGTTGCCTTTGCTAGCTTACTACCATTCCAGAGATGAGAAGCTCATGCTTTACAGTTTTGCAGGGAATGGAAATCTTTTCTCCCGACTTCATGATAGAGGCGGAAACAGGGCTCCGTTCAGTTGGAACTCAAGATTGTCAGTTGCAAGAGGAGTGGCTCGAGCATTGGTGTACCTGCACCTCAACCACAAGTTCCAAAACGTTGTTCCACACGGCAACTTGCGGTCTTCAAACGTACTATTCGATGAAAACGATGCGGTTCTTGTTTCTGACTTCGGTCTTGCCTCCTTGATAGCACAACCTATTGCAGCTCAGCACATGGTTGTTTACAAATCACCTGAATATGGGTACGCAAGAAAGGTGACGATGCAATCCGATGTGTGGAGCTATGGTTCACTTTTGATAGAGCTTCTGACAGGAAAAGTATCTATTAACTCGGCTCCACAAGGAACGAATGGCGTGGATCTATGCAGTTGGGTTCATAGAGCTGTGAGGGAAGAATGGACTGCTGAGATATTTGACAAAGAAATATCTGGGCAAAAGAGCGCACTTCCTGGGATGCTGAGGTTGTTGCAGCTTGCAATGCGTTGCATTGAGAGGTTCCCTGAGAAGCGGCCTGAGATGAGAGAGGTGATGAGAGAAGTGGAGAAAATACAGGCCCCAGTGATCACTGAAGATGATGACGATGTGTCTGGGGATAGGTCCCTAACTGATGATTCTCTTTCAACCAGTACCTCTATCATTGGAGATGAAAGATAG 1188 0.4436 MNISFIINVVLLLAIILLLLLYYNTYTRLNKIVKGQIHTVIEKEDDVEIGVEKKIEIGEGTVIMTVEQRKGLIFFNDNQKFQMGELLRASAEPLGHGILGNSYKAMLNGGPTIVVKRLRDLKPFTKEEFEKIVNAIADMKHPNLLPLLAYYHSRDEKLMLYSFAGNGNLFSRLHDRGGNRAPFSWNSRLSVARGVARALVYLHLNHKFQNVVPHGNLRSSNVLFDENDAVLVSDFGLASLIAQPIAAQHMVVYKSPEYGYARKVTMQSDVWSYGSLLIELLTGKVSINSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISGQKSALPGMLRLLQLAMRCIERFPEKRPEMREVMREVEKIQAPVITEDDDDVSGDRSLTDDSLSTSTSIIGDER* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1515 395 SMART serkin_6 88 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1515 395 PANTHER RECEPTOR-LIKE KINASE 3 391 - -
Vra10g1515 395 Gene3D Phosphorylase Kinase; domain 1 60 163 - -
Vra10g1515 395 ProSiteProfiles Protein kinase domain profile. 88 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1515 395 Gene3D Transferase(Phosphotransferase) domain 1 165 379 - -
Vra10g1515 395 PANTHER OS05G0588300 PROTEIN 3 391 - -
Vra10g1515 395 Pfam Protein tyrosine and serine/threonine kinase 92 357 IPR001245 GO:0004672|GO:0006468
Vra10g1515 395 SUPERFAMILY Protein kinase-like (PK-like) 92 364 IPR011009 -
Vra10g1515 395 MobiDBLite consensus disorder prediction 379 395 - -
Vra10g1515 395 MobiDBLite consensus disorder prediction 361 395 - -
Vra10g1515 395 ProSiteProfiles PUA domain profile. 49 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1515 Vra-Chr10 19982612 19985035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1515 43 387 Receptor kinase-like Gene Family AT2G36570 38.441 3.02e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra10g1515 PK_Tyr_Ser-Thr 3.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1515 - - gmx:100816006 603.208