Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1510 ATGGCTTCGTCTCTTTCATTTCCGATCCTCATTCCGTTCGCAATGGAATCCCCGTCGTGTGTGACGGTGCCGCATATGGCATTTTCCAAACCTCCGAAGCACCACCGTCCTTTGGTCAGAGGTCGAGTCAGAGTTAGACCGCTAAATCGCCACCTCAACTCCGCTACGCTGTTCCGGTGCTCTGCCGCCGCGGACGACGCTGTCATCACCCTTCACGTTGGGGGAATGATGTGCGAAGGATGCGCTAATAGCGTCAAAAAGCTTTTAGAAAGCCGACCTCAAGTGTTGTCTGCTCGGGTAAATTTGGCATCAGAGATAGCAATTGTTTCGCCTGCACCTGAAGAAAAACCGGCGCCAAATTATCTAAAGCAATTAGGGGAGGAACTTGCACAGCATTTAACTACCTGTGGTTTTACATCTACCCTTCAAGGAAAATTGGCTTGTCTTTCGTTAAAATTGGACAAGATTGTTCCACGCTTTGAATATACACTTGATGGGTCTTCTAAGGTTTCAACTTTGTTGCACTACTCAAAGTATAAGGAAGACATGCACCAAAGGTTCCCATCACTAATAGTTGTAGCAAGCAATATTTTGATGTTCTCTATGCCTAATACAGCTTTGGCTGAAACTTGTGAGGCTGATAACTCTTTTTTCAATATGCCTATATTGCTAGCGGTAGCCCTCATTGGAGCCACAGTTGGAGGGTTGCTTGCTCGGCAAAGAAGAAACGAATTACAACGGGTAAACGAGCAATTAATCCAAATCAATGCAGCATTAAGGAAGCAAGCCAAAATCGAGTCTTATGCTCCTAGCTTGAGTTATGCTCCCATTGGTGGTGGTAGGATACCTGATAATGAAATTATTGTTGACCCAAAGAAGCAAGAACTAATTTCTAAGTTGAAAAATGGAAAGAACTTTCTAAGGAATCAACAGTTGGATAAAGCATTCATAGAGTTTAAGAATGCACTTGAGCTTGCCCAGAATCTAAAGGATCCTATCGAGGAAAAAAAGGCTGCCAGAGGTTTAGGAGCCTCATTGCAGAGACAGGGAAAATATCGAGATGCTATAAAATATCATTCCATGGTTTTGTCCATCTCTGAACGAGAAGGGGAGGACTCCGGCAATACAGAGGCGTTTGGGGCAATTGCTGATTGTTACACTGAGCTTGGAGAGCTTGAGAAAGCAGGCCAATTCTATGACAAATATATTGCAAGACTAGAAAAGGACTAA 1230 0.439 MASSLSFPILIPFAMESPSCVTVPHMAFSKPPKHHRPLVRGRVRVRPLNRHLNSATLFRCSAAADDAVITLHVGGMMCEGCANSVKKLLESRPQVLSARVNLASEIAIVSPAPEEKPAPNYLKQLGEELAQHLTTCGFTSTLQGKLACLSLKLDKIVPRFEYTLDGSSKVSTLLHYSKYKEDMHQRFPSLIVVASNILMFSMPNTALAETCEADNSFFNMPILLAVALIGATVGGLLARQRRNELQRVNEQLIQINAALRKQAKIESYAPSLSYAPIGGGRIPDNEIIVDPKKQELISKLKNGKNFLRNQQLDKAFIEFKNALELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMVLSISEREGEDSGNTEAFGAIADCYTELGELEKAGQFYDKYIARLEKD* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1510 409 Pfam Heavy-metal-associated domain 70 117 IPR006121 GO:0046872
Vra10g1510 409 Gene3D Tetratricopeptide repeat domain 291 409 IPR011990 GO:0005515
Vra10g1510 409 SUPERFAMILY HMA, heavy metal-associated domain 66 117 IPR036163 GO:0046872
Vra10g1510 409 Pfam Tetratricopeptide repeat 339 408 - -
Vra10g1510 409 Coils Coil 238 262 - -
Vra10g1510 409 ProSiteProfiles Heavy-metal-associated domain profile. 68 142 IPR006121 GO:0046872
Vra10g1510 409 CDD HMA 70 141 IPR006121 GO:0046872
Vra10g1510 409 ProSitePatterns Heavy-metal-associated domain. 73 102 IPR017969 GO:0046872
Vra10g1510 409 PANTHER PROTEIN FLUORESCENT IN BLUE LIGHT, CHLOROPLASTIC 174 409 - -
Vra10g1510 409 SUPERFAMILY TPR-like 303 404 IPR011990 GO:0005515
Vra10g1510 409 Gene3D - 65 145 - -
Vra10g1510 409 PANTHER PROTEIN FLUORESCENT IN BLUE LIGHT, CHLOROPLASTIC 174 409 IPR044243 GO:0015995|GO:0033014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1510 Vra-Chr10 19940171 19947518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1510 68 141 Primary Pumps ATPases AT4G33520 63.514 3.56e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1510 - - vra:106775694 785.793