Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1509 ATGGCGGAGGGAGCTGGTTATGGGTTGCGTCGTCCATTAGATATTCAGCAACTACAATTTGAAGCCCAGCATAGGTGGTTGCGGCCTGCAGAAATTTGTGAAATTCTTCGTAATTATCAGATGTTTCAAATCACTTCAGAACCTCATAACAGGCCACCAAGTGGTTCACTTTTTCTATTTGATAGAAAGGTTTTGAGGTACTTTAGAAAGGATGGACATAATTGGAGAAAGAAAAAGGATGGAAAGACCGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGACGTGTTGCATTGCTACTATGCCCATGGAGAAGATAATGAACATTTTCAAAGGCGAAGCTACTGGATGCTAGAACCGGATATGATGCACATAGTATTTGTCCATTACTTGGAAGTTAAGGGTAACAAAAATATTGTAGTAAATACTGAAGGTGACGAGGTCCCGCTAGATTCCCAAAAGGTTACTTCACTTAGCACAGATTCCATCAGCCCATCATCCAGTTTGATGTCTTTACGTGAAGATGCCGATTCTGAGGATGTCTACCAAGCTAGTTCTGGGTTGCGGCCACTACATGAGTCACAACATATGGGGAATGGTCCATTGCCAGAAAAGATCGATGCTGGTTTGAATAGTTCATATCATACGAGTCCCTTTTCAGGTGATCATGGACAGTCATCAATTTCTGGAACAGATTATATCCCAGTTGTTCACGGGGATAAATTTAGAGGAAATGACACTCCTTATTTTGATGGTGAGAAAACACATGGCATGGCACCATGGGACACTGTCTTGCAAAGCACTGCCAAATTGCACAATGATCCTTCTCTTGCATCGTTTCCTTCCATCCCTCCTAGTTCAATGGGTAATGTCCTTGAACAAGAACATACCATTTATGGTGACCTTTTAACAGGCAAAAGAGATCTCACTGAGGAAGAAGAGAGCTCTCGGTCTTTCCAACCGAGTTGGCAGATTCCTTTTGAAGACAATTCAGGAGACATGCCAATGTCAAGCCAGAATCAACCATTTGGTCTGCATTATGTATCTGATTATGGCACCGGTTTACTAGGGTATGGAGCTCGTAATGCAAGCTCTGAAATTGCTCCAATCCTGTACAGTTTCAATGGTGATCCAAAAGAGCAGCTTTTGCAGAAAAACTATCCACAAGAGCATGCAGATGGACAATCTCAGCATACTCTAAAATCCAATTCTGCAAATAAAGTTCCTGATGAAGAATCTATCAACTATGGCTTAACTGTGAAGCGTACGTTATTGGACAAAGATGAGAGCCTGAAGAAGGTTGATAGTTTCTCTCGTTGGGTTACTAAAGAACTTGGAGAGGTAGCTGATTTGAATATGCAGTCCACACCTGGTATTTCATGGAGTACAGATGAATGCCAGCATGTGATAGATGATAGCTCATTGAGCCCATCTCTCTCTCAGGACCAACTGTTTAGTATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTTAGATATTGAGGTGTTGATTATTGGATCATTTTTGAAGAGTCAACCAGAGGTGACAACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCAGCTGAGGTTTTAGCTGATGGAATTTTGTGCTGCCAAGCTCCCCGTCATAAAGTTGGACGGGTCCCATTCTATGTAACATGTTCCAATAGGCTAGCTTGTAGTGAAGTGCGGGAATTCGATTTCAGAGAAGGCTTTGCTAGAAATGTAGATTTTGCAGAATTTTTTGGCAGTTCAACTGAAATGCGCATTCATTTGCGACTGGAGAAATTTCTTACTTTAAAGCCAGTGAACCCTTCAAACCATTCTTTTGAGGGTGATATGGAGAAAAGGAACTTAATTTTCAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCTATTAAGGACGAGCCAACTAAAGAAGTGGATATATCCCAACACATGGTGAGGGAGCTTCTTTTTCACAGGCAGGTTAAAGAGAAGTTGTACTCATGGCTTCTTCACAAAGTAACTGAGAATGGTAAAGGACCAAATGTATTAGATGAGGGTGGGCAAGGTTTGCTACACTTAGCAGCTTTTCTTGGTTATGACTGGGCCATAAATCCAATTATAGCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGACAGCTCTTCACTGGGCTGCATTCTGTGGCAGAGAGCGGACAGTTGCTCTCCTGGTCTCCATGAGAGCAGATTGTGGTGCAGTGACAGATCCATCTCCTGCATTTCCGTCAGGTAGACCAGCTGCAGATCTTGCCTCTGCAAACGGGCACAAAGGAATCTCTGGTTTTCTTGCTGAGTGTTCATTAACTCAAAATCTTGAATCCCTCAAAGTGGATGATCAAAATGGTAGTCGGCAAGAAATTTCAGGAATGAAAGTGGTGCAGACAGTTTTAGAACGAACTGCAACACCTATGCTCTATGGTGATATGCCAGATGTCCTCAGCATGAAGGATTCGCTCACTGCTGTCCGAAATGCAACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGATGTTAACTGAGTATGAGGGTGATGATGAGCTTGGATTGTCAGATCAGCAAGCTCTATCTCTTCTAGCTTCTAGGGCCTGTAAATCTGGACAAGGACATGGTTTAGCCAATGCTGCTGCAATACACATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTTTTGATGATTCGGCAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTACGGAAACAGTATAAACCAATCATCTGGTCTGTGGGGATCCTAGAAAAGGTCATATTACGTTGGAGGCGCAAGGGTAGTGGTTTGCGTGGATTTCGACCAGATGCGCTTAACAAAGTCCCCAGTCAACAAAATGATTCTCAGAAAGAGGATGATTATGATTTCCTCAAGGAGGGACGGAAACAAAAGGAAGAAAAGATCCAAAAGGCCTTATCAAGAGTGAAGTCCATGGTTCAGTATCCAGAGGCACGTGCCCAATACCGACGTCTGCTAAATGTTGTCGAGGACTTCCGTCAAACCAAGGGAACTAACGAGGGTTTGACCAGTTCTGAAGGGACAGTTGATGGTATGGAGGATTTAATTGATATTGATATGCTTTTAGACGACGATAATTTCATTCCTATAGCATTTAACTGA 3225 0.4233 MAEGAGYGLRRPLDIQQLQFEAQHRWLRPAEICEILRNYQMFQITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNEHFQRRSYWMLEPDMMHIVFVHYLEVKGNKNIVVNTEGDEVPLDSQKVTSLSTDSISPSSSLMSLREDADSEDVYQASSGLRPLHESQHMGNGPLPEKIDAGLNSSYHTSPFSGDHGQSSISGTDYIPVVHGDKFRGNDTPYFDGEKTHGMAPWDTVLQSTAKLHNDPSLASFPSIPPSSMGNVLEQEHTIYGDLLTGKRDLTEEEESSRSFQPSWQIPFEDNSGDMPMSSQNQPFGLHYVSDYGTGLLGYGARNASSEIAPILYSFNGDPKEQLLQKNYPQEHADGQSQHTLKSNSANKVPDEESINYGLTVKRTLLDKDESLKKVDSFSRWVTKELGEVADLNMQSTPGISWSTDECQHVIDDSSLSPSLSQDQLFSINDFSPKWAYAELDIEVLIIGSFLKSQPEVTTCNWSCMFGEVEVPAEVLADGILCCQAPRHKVGRVPFYVTCSNRLACSEVREFDFREGFARNVDFAEFFGSSTEMRIHLRLEKFLTLKPVNPSNHSFEGDMEKRNLIFKLISLREEEEYSIKDEPTKEVDISQHMVRELLFHRQVKEKLYSWLLHKVTENGKGPNVLDEGGQGLLHLAAFLGYDWAINPIIAAGVNINFRDVNGWTALHWAAFCGRERTVALLVSMRADCGAVTDPSPAFPSGRPAADLASANGHKGISGFLAECSLTQNLESLKVDDQNGSRQEISGMKVVQTVLERTATPMLYGDMPDVLSMKDSLTAVRNATQAADRIHQVFRMQSFQRKMLTEYEGDDELGLSDQQALSLLASRACKSGQGHGLANAAAIHIQKKFRGWKKRKEFLMIRQRVVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPDALNKVPSQQNDSQKEDDYDFLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKGTNEGLTSSEGTVDGMEDLIDIDMLLDDDNFIPIAFN* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1509 1074 SUPERFAMILY E set domains 489 574 IPR014756 -
Vra10g1509 1074 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vra10g1509 1074 SUPERFAMILY Ankyrin repeat 673 783 IPR036770 -
Vra10g1509 1074 MobiDBLite consensus disorder prediction 391 411 - -
Vra10g1509 1074 Gene3D - 898 944 - -
Vra10g1509 1074 Coils Coil 989 1009 - -
Vra10g1509 1074 SMART iq_5 920 942 IPR000048 GO:0005515
Vra10g1509 1074 SMART iq_5 897 919 IPR000048 GO:0005515
Vra10g1509 1074 MobiDBLite consensus disorder prediction 969 988 - -
Vra10g1509 1074 MobiDBLite consensus disorder prediction 150 229 - -
Vra10g1509 1074 MobiDBLite consensus disorder prediction 151 174 - -
Vra10g1509 1074 ProSiteProfiles IQ motif profile. 921 945 IPR000048 GO:0005515
Vra10g1509 1074 SMART ANK_2a 689 718 IPR002110 GO:0005515
Vra10g1509 1074 SMART ANK_2a 722 751 IPR002110 GO:0005515
Vra10g1509 1074 SMART ANK_2a 761 790 IPR002110 GO:0005515
Vra10g1509 1074 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1074 - -
Vra10g1509 1074 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vra10g1509 1074 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vra10g1509 1074 Pfam IQ calmodulin-binding motif 900 918 IPR000048 GO:0005515
Vra10g1509 1074 Pfam IQ calmodulin-binding motif 923 942 IPR000048 GO:0005515
Vra10g1509 1074 MobiDBLite consensus disorder prediction 212 229 - -
Vra10g1509 1074 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1074 - -
Vra10g1509 1074 Gene3D - 651 844 IPR036770 -
Vra10g1509 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 948 IPR027417 -
Vra10g1509 1074 Gene3D Immunoglobulins 482 577 IPR013783 -
Vra10g1509 1074 Pfam IPT/TIG domain 489 563 IPR002909 -
Vra10g1509 1074 ProSiteProfiles Ankyrin repeat profile. 722 754 IPR002110 GO:0005515
Vra10g1509 1074 ProSiteProfiles IQ motif profile. 898 927 IPR000048 GO:0005515
Vra10g1509 1074 ProSiteProfiles Ankyrin repeat region circular profile. 722 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1509 Vra-Chr10 19927325 19938748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1509 1 1040 CAMTA Transcription Factor Family AT5G64220 54.080 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vra10g1509 CG-1 1.1e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1509 K21596 - gmx:100818124 1853.57