Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1508 ATGGATTGTTTCTGTTGCTTCCATCAGGTGGTTGGAGGACGCTCTTCATGTAGCTCCGGCAAGGGCAGGAGCTATCTGTTTCCAGTTAAGTATGGTTTTAGCCTAGTTAAAGGGAAAGCAAACCACCCAATGGAGGACTATCATGTAGCAAAAATTGTCGAGTACGAAGGGCAAGAGTTAGGACTTTTTGCTATATATGATGGACATTTGGGAGACAGTGTGCCAGCCTATTTACAAAAGCATCTCTTTTCTAATATCTTGAAGGAGGAGGACTTCTTGCCCGATCCTGCAAATTCTATCATTAAAGCTTACGAGACAACAGATCAGGCAATTCTTTCTCACAGTTCTGATTTGGGGCGAGGAGGATCTACTGCAGTCACTGCAATTCTGATTAATAATCAGAACTTATGGGTCGCAAATGTTGGAGATTCACGAGCAGTTCTGTCAAGGAAGGGGGTGGCCATTCAGATGACCATTGATCATGAGCCAAATACTGAGAGGGGCTTCATCGAGAACAAAGGAGGCTTTGTCTCAAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCATTTGGTGACAAAAATCTAAAATCACACTTGCGATCTGATCCTGATGTACATCCTTTTGATATAAACTCAGATGCTGAGCTTTTGATACTTGCTAGTGATGGTCTTTGGAAGGTAATGGCAAACCAAGAAGCAGTTGATATTGCTAGAAGGATAAAAGATCCACAAAAGGCAGCAAAAAAGCTAGTTGCGGAGGCATTGAACAAAGACAGCAAGGATGATATTTCGTGCATTGTAGTTCGTTTCAAGGGTTGA 840 0.4298 MDCFCCFHQVVGGRSSCSSGKGRSYLFPVKYGFSLVKGKANHPMEDYHVAKIVEYEGQELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFLPDPANSIIKAYETTDQAILSHSSDLGRGGSTAVTAILINNQNLWVANVGDSRAVLSRKGVAIQMTIDHEPNTERGFIENKGGFVSNMPGDVARVNGQLAVSRAFGDKNLKSHLRSDPDVHPFDINSDAELLILASDGLWKVMANQEAVDIARRIKDPQKAAKKLVAEALNKDSKDDISCIVVRFKG* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1508 279 CDD PP2Cc 29 277 IPR001932 -
Vra10g1508 279 Gene3D - 26 279 IPR036457 -
Vra10g1508 279 SMART PP2C_SIG_2 44 277 IPR001932 -
Vra10g1508 279 SUPERFAMILY PP2C-like 22 278 IPR036457 -
Vra10g1508 279 Pfam Protein phosphatase 2C 39 270 IPR001932 -
Vra10g1508 279 ProSiteProfiles PPM-type phosphatase domain profile. 30 277 IPR001932 -
Vra10g1508 279 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 7 278 - -
Vra10g1508 279 PANTHER PROTEIN PHOSPHATASE 2C 7 278 IPR015655 GO:0004722|GO:0006470
Vra10g1508 279 SMART PP2C_4 26 275 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1508 Vra-Chr10 19918012 19921793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1508 1 278 PP2C-type Phosphatase Gene Family AT1G22280 69.686 5.54e-139 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1508 K17506 - gmx:100787659 486.108