Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1503 ATGAGTATTTTGAAATCGTGGAAGCTTAAGCTGAGTTCAGAAATGGAAGCCGCAGCGTTGAAAGTGGAGTCACTTGCGTGCATAGACTCTACCACTCTCTCTCACTCCGAGCTTCTCGCCCTTTCTCTCTCCTCTCTCTGCGCCTTCGACCTTCGCGCCACCAATGACCTCGTCACACCCAAGATCGACCCCGCGCTCTTCAACGAGAGCGCCGGCTCCCGCCGCCAGACCTACTCCCGCCCCCAGTCCTCCCCGACGGGCCGCCGCCGCCGCCTCGCCGGCCTACTTCCCGCCCCCAAACCCCCTCCCCTCCCCGCTCACGACCCCGAGAACGCCGAAAACCGTCTCATCATTGACTACCTTAAACAACTCATCCGAGAGGACCCCAAGTTCGACCAGGTCCACCTCGCTTCCCCTTCCCTTCCCCCACCCAATGTCAAGCGCAAGCGAGGCCGCAAGCCCAAGCTCAAACTCCACCTTGAACACTGCTACCGCGGAATCGACATTCTTAACCGAAACGGCGTGGCCGTTGATCTCTCGCAGTTGGCCACCTCCCAAGACCCCTTCGCCGATGAGCTCAAGAGGCGCACAGAGGGTTTGAGCAGCGAAGAGGAGCTGTTAGGGTTTTTGAGGGATTTGCCTGGCCAATGGGGGAGCCGTAGGAAGAAACGCAGGATTGTTGATGCCTCGGATTTCGGCGATGTGTTGCCACTCAGTTGGAAGATTCTTCTCGGTTTGAAGAGGAAGGACGGTCGTGCGTGGATCTATTGCCGCAGATACATTAGCCCTAGTGGACAGCACTTTGTGTCTTGCAAAGAGGTTTCTTCGTATTTACAGTCTCTTCTGGGTAATGGCGATGGGCAATCGCAAAGTAGTCGCAGGAGTGAAAATTTAGTGCAGGAGCAGATAGTACCTGCTGAAAAGTCTGCTGGTGTCACTCCTGAACGTCAAGATCAGAGACAGATTGTTGCCGTGAACGCGGAGGTGCCTGGATTATTTGCGGGTGCTCATGAAAGAGTCAAAGAGGTTGCCTTGTTGGGAATTGAAAATCTTGCAGATGTGCAGATTCAAGATCTGTTTGAGTGTCGCAAGTGCAATATGAGTTTTGACGAGAAGGATTCGTACTTGCAGCACCTGTTGTCAGTTCACCAGAGGACGACAAGGCGGTACCGGCTTGGTTCCTCTGTTGGAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGTTACAATGGTCATGTGGGGATTCATGTTAGGAATTATGTGAGGAGAGTAGAAGATTCACCAGGTCAGATTAATGTCCAGAGGACAGATGACAAGTCTCCAGTCAGGGAGGACATGCCGTTAAGGATATCTAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGGTTGTGTCACAGAATCCCATCATTTAGCTAAACTGAATGGGATTCCTGCTTCGGATGTCGCTGTTGGTTACTTGGACCAAGATGGAAACTCTGAGGCTCCAATCAGTGAAAAGCAGATGGAAGATAGCTTGACTAAGAAAAATGTGGATCATCATGGAATGGATGGAAAGGTAGAGGAAGTTGATGATGATAACCGTGTGATAGATGTAAAAATGGTTACTTTTCTTGATAACATGGGTTTGTTATCTGTAAATAAGCAAGATGTTAAAGCATCCGAGACTTCCGAAATAAAAGATGATGTGGAATTGACTATTGAGGAACTGGATCAATCTGGGATTGATTTGGATGGTGTTTCTGAAGTTCGTATACTTCCTTTATCTGAACTTAACATTATACCAGAATCGGAAAAGGGTGAAAATTCTGAATCTTCTAATGCTAAAGTTCAGTTTAAACCTGATGAAGGCATTAGTAACAAGAGTGAGTTAGAATTTGGTTTAAATTGCTTGAAAGATGTACCTGTTACCGTTAGTACTGATGTCCCAGAGATGGTAATGGCAGCTTCTGAAGAAAATGTGGTACATTCTAGTGCTTTTAACTCCTCTATATCCACAGAACAACCTATGGATTGTTTGCCTGCATTCAGCTCTGATAAGGGAGGAAAACAGTTTTCCAGTCTTGAAAATGAACATGATAGCGTGAAGGGTCTCGAGGAATTGAGGTTTGATGAAATAGATAGTGTTGATTATGATTTTGCAAGGATTCAGGATTCTCCTTCTCCGCCTGCTGTATCAGCTGAATTGGCCAATGACACAGTGATGGAAGACACGTATTTATCCTCAGTTCAGTTTGAATCGCAGCTTACAACTGTATGTGTATGGTGTGGAATAGAGTTTAACCATGACGCTGTCAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAAGCAAAAATCTCTGGTCAAATCAACGTGTTGGACTGTGAATCGCCAAATGCTGGCTGTCTATAG 2460 0.4703 MSILKSWKLKLSSEMEAAALKVESLACIDSTTLSHSELLALSLSSLCAFDLRATNDLVTPKIDPALFNESAGSRRQTYSRPQSSPTGRRRRLAGLLPAPKPPPLPAHDPENAENRLIIDYLKQLIREDPKFDQVHLASPSLPPPNVKRKRGRKPKLKLHLEHCYRGIDILNRNGVAVDLSQLATSQDPFADELKRRTEGLSSEEELLGFLRDLPGQWGSRRKKRRIVDASDFGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLGNGDGQSQSSRRSENLVQEQIVPAEKSAGVTPERQDQRQIVAVNAEVPGLFAGAHERVKEVALLGIENLADVQIQDLFECRKCNMSFDEKDSYLQHLLSVHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEDSPGQINVQRTDDKSPVREDMPLRISKMDALIEIAQNSIMEGCVTESHHLAKLNGIPASDVAVGYLDQDGNSEAPISEKQMEDSLTKKNVDHHGMDGKVEEVDDDNRVIDVKMVTFLDNMGLLSVNKQDVKASETSEIKDDVELTIEELDQSGIDLDGVSEVRILPLSELNIIPESEKGENSESSNAKVQFKPDEGISNKSELEFGLNCLKDVPVTVSTDVPEMVMAASEENVVHSSAFNSSISTEQPMDCLPAFSSDKGGKQFSSLENEHDSVKGLEELRFDEIDSVDYDFARIQDSPSPPAVSAELANDTVMEDTYLSSVQFESQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQINVLDCESPNAGCL* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1503 819 MobiDBLite consensus disorder prediction 70 86 - -
Vra10g1503 819 ProSitePatterns Zinc finger C2H2 type domain signature. 362 383 IPR013087 -
Vra10g1503 819 Gene3D Classic Zinc Finger 349 432 - -
Vra10g1503 819 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 15 808 IPR037472 -
Vra10g1503 819 ProSiteProfiles Zinc finger C2H2 type domain profile. 360 388 IPR013087 -
Vra10g1503 819 SMART c2h2final6 360 383 IPR013087 -
Vra10g1503 819 SMART c2h2final6 407 429 IPR013087 -
Vra10g1503 819 MobiDBLite consensus disorder prediction 69 111 - -
Vra10g1503 819 ProSiteProfiles Zinc finger C2H2 type domain profile. 407 434 IPR013087 -
Vra10g1503 819 SUPERFAMILY DNA-binding domain 232 280 IPR016177 GO:0003677
Vra10g1503 819 ProSitePatterns Zinc finger C2H2 type domain signature. 409 429 IPR013087 -
Vra10g1503 819 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 15 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1503 Vra-Chr10 19893914 19898663 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra10g1503 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1503 - - var:108341719 1363.21