Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1495 ATGGAAAGCGATGACGATGTTGACATGCACGCAGCCGACGCCAACGAAGAATTGGATGACATGAAGAAGCGCTTGAAAGAGATGGAGGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTTCAAGATCCTGCAACTGCTTCTGCGAGTCAGGCCAATAGAGAGGAAATAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACTATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTTGAGTTCCTTGAGGTGGAAGCTGTTCAAGAGGCCCTTTCGTTGAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTGACAGCTAAAAGGACCAATATACCAGGGATGAAACAGTTTCGTTCCCGCCAGGCGAATCCTTACGCTGGGGGCTTTCGAGGCAGATCCCCATATGCACCTCCCTTTATCTATTCTCCATATGGATATGGAAAGGTCCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTAA 594 0.4714 MESDDDVDMHAADANEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATASASQANREEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVTAKRTNIPGMKQFRSRQANPYAGGFRGRSPYAPPFIYSPYGYGKVPRFRMAMRYSPYY* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1495 197 CDD RRM_II_PABPs 69 140 - -
Vra10g1495 197 Coils Coil 11 45 - -
Vra10g1495 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Vra10g1495 197 MobiDBLite consensus disorder prediction 43 63 - -
Vra10g1495 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 5 194 - -
Vra10g1495 197 SUPERFAMILY RNA-binding domain, RBD 56 168 IPR035979 GO:0003676
Vra10g1495 197 PANTHER - 5 194 - -
Vra10g1495 197 SMART rrm1_1 69 140 IPR000504 GO:0003723
Vra10g1495 197 Gene3D - 4 141 IPR012677 -
Vra10g1495 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1495 Vra-Chr10 19847668 19852240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1495 69 181 Eukaryotic Initiation Factors Gene Family AT2G36660 26.316 3.29e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1495 K14396 - gmx:100791351 368.237