LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra10g1493	ATGGGAAACATTGAAACTTGGAGTGCTGGTTGTTTTCCCTCCGAAAGGTGTGAGAGTGTGCAGAGCAGAGGAGCATGGTTAACGGGGAATTACATCGCTCATCCAGATGACTTCCAGTTAATAGTCTCCTTTCTCGAACGCAACCATTCCGACCAGTTCCAGTCCATTCTTTCTTCTCCCGATTCCGACCTTCACTTCCCTCTTTTCGTCGATTTTGCTGAACTGTTCGAAGAGGAATTGCGCGTTGCTTGTCTCCTCTTGTTCCAACCCAATACCTATTTGCGAGTATTCGACGCGGCTGCCATTTCGGCCCAGCAAACCGTATTGGCGGATGGTAAGAAAGGGGTGGAAAAAAAATCCATTCATGTTCGTATTAACACCTGTGGCTCACCCCTTGAATTCCCTGAAACTTTTCCAAGCATTGGACGTGTTCGCGTGCAGCACCATGGAATTCTTCTCACTCTCAAAGGGATAGTGATTAGGTCTGGAGCAATCAAGATGCACGAAGGGGAGAGGACGTACATGTGTCACAAATGCAAAAACAGCTTCCCAGTACATCCTTTGGTGGAAGCTCGAAACTCGATATCATTACCTTCAATTTGCCCAATTCAGAATTCCAAGCCTTGTTCCGGCACGAAATTTCAGTATGTAGAGAACACTATAGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTAAAGGATGACCTCGTTGATGTTGTTAAAGCTGGAGCCAAATGGGCTCCAGAGTTGAAGGATGTGCGTTGTGACCTTGATCCTGTATTAATTGCCAACAATGTAAGGAGAGTCAATGAACTGAAGTCAGTAATTGATGTTTCTGACGATTTTGTTATGAAATTCAAGCAGTTTTGGGCTCACTTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATCCTGCGAGGAATTTGCCCGCAAGTATTTGGCCTTTTCACTGTCAAGTTGGCTGTTGCATTAACTCTTATTGGAGGTGTGCAACATGTCGATGCTTCTGGAACTAGGATACGAGGGGAGTCCCACTTACTCCTGGTTGGTGATCCCGGCACCGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGTAACCGCTCTGTTATTACTACTGGATTGGGAAGCACAAGTGCTGGATTGACTGTTACTGCAGTGAAGGATGGAGGAGAATGGATGTTGGAAGCTGGAGCTCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGCATGAGGGAGCATGATAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACTGTATTTGGTGCCACAAATCCCAAGGGACAGTATGATCCTGATCAACCTCTGTCTGTCAACACAACACTCTCCGGTCCTTTATTAAGCAGGTTCGATATTGTCCTTGTTCTATTGGATACAAAGAATCCTGATTGGGATGCAGTGGTTTCATCTCATATTCTTTCCGAGGCAGAATCGGATAGCACCACTAATGACGAAGATCTCATAAATAGCTGGCCACTTGCTACTCTCAAGAGGTACATACACTATGTGAAAGAACATTTCAGACCAGTCCTAACGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTCATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCACAAGCCCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATAACAGCTATTTTATGCATAGAATCATCCATGACTACCTCAGCTATCGTGGATTGCATTGGGAATGCTTTGCATTCCAATTTTGCTGACAACCCTGATCAGGAATATGCGAAGCAAGAAATATTGATCCGACAAAAATTGAATAGAGTGGAGAGTGAAGGCTAA	2013	0.4401	MGNIETWSAGCFPSERCESVQSRGAWLTGNYIAHPDDFQLIVSFLERNHSDQFQSILSSPDSDLHFPLFVDFAELFEEELRVACLLLFQPNTYLRVFDAAAISAQQTVLADGKKGVEKKSIHVRINTCGSPLEFPETFPSIGRVRVQHHGILLTLKGIVIRSGAIKMHEGERTYMCHKCKNSFPVHPLVEARNSISLPSICPIQNSKPCSGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGAKWAPELKDVRCDLDPVLIANNVRRVNELKSVIDVSDDFVMKFKQFWAHFKDSPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRIRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAESDSTTNDEDLINSWPLATLKRYIHYVKEHFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFADNPDQEYAKQEILIRQKLNRVESEG*	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra10g1493	670	Pfam	MCM OB domain	143	264	IPR033762	-
	Vra10g1493	670	ProSiteProfiles	MCM family domain profile.	319	522	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Vra10g1493	670	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	329	636	IPR027417	-
	Vra10g1493	670	SMART	mcm	137	628	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Vra10g1493	670	SMART	AAA_5	361	510	IPR003593	-
	Vra10g1493	670	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	360	375	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Vra10g1493	670	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	418	432	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Vra10g1493	670	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	446	459	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Vra10g1493	670	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	496	504	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Vra10g1493	670	Pfam	MCM AAA-lid domain	545	626	IPR041562	-
	Vra10g1493	670	PANTHER	DNA HELICASE MCM9	55	666	-	-
	Vra10g1493	670	CDD	MCM9	322	626	-	-
	Vra10g1493	670	SUPERFAMILY	Nucleic acid-binding proteins	64	262	IPR012340	-
	Vra10g1493	670	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	55	666	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Vra10g1493	670	Gene3D	-	144	263	IPR012340	-
	Vra10g1493	670	Gene3D	-	168	224	-	-
	Vra10g1493	670	Pfam	MCM P-loop domain	321	524	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Vra10g1493	670	Gene3D	-	298	632	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra10g1493	Vra-Chr10	19828786	19839779	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra10g1493	41	651	Core DNA Replication Machinery Family	AT2G14050	73.365	0.0	943

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra10g1493	K10738		-	gmx:100776255	1080.47