Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1486 ATGTCTCAGTCGGAGAGTAAGAAGAAGAAGGAGCGCGGCACCAGTAAGAAGGAAGAGGAGCAAGCAGGCAAAGATGAGGGGTTGATGATAAAGCCTCAGAGCTTCACTCCCCCCATCGACACCTCCCAATGGCCAATCCTTCTCAAAAACTACGATCGCCTCAACGTACGCACCGGCCACTACACCCCTATCCCCTCCGGTCACTCCCCCCTCAAACGCCCCCTCCCGGAATACCTCAAATACGGCGTCATCAACCTCGACAAGCCCGCCAACCCTTCCTCCCATGAGGTCGTCGCCTGGATCAAGCGCCTCCTCAAAGTCGAGAAGACCGGCCACTCCGGTACCCTCGACCCCAAGGTCACCGGCAACCTAATCGTCTGTATTAACCGCGCCACTCGCCTTGTCAAGTCCCAGCAGGGTGCCGGCAAGGAATACGTCTGCATCGCCCGTCTCCATTCCGCTGTTCCCGACGTCTCCAAGGTCGGACGCGCCCTCGAGACCCTCACTGGCGCCGTCTTCCAGCGCCCTCCCTTGATCTCTGCCGTCAAACGTCAACTCCGCATCCGGACCATCTACGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCACTTAGTTGTTTTCTGGATTTCGTGTGAGGCTGGGACCTATGTTAGGACTATGTGTGTCCATTTGGGGTTGCTTCTTGGTGTGGGTGGCCATATGCAAGAGCTTAGGAGGGTTCGCTCTGGGATCATGGGGGAGAAGGATAACATGGTGACCATGCATGATGTCATGGATGCCCATTGGGATTTAACTCAAGGTGGGAGGGGTGAGAGTTATTTGAGGAGGGTTGTTATGCCCTTGGAGGTTCTTTTGACTAGCTATAAGAGGCTGGTTGTTAAGGACTCTGCTGTCAATGCTATTTGCTATGGTGCTAAGTTGATGATTCCTGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGGTTGTGCTTATGACCACCAAGGGGGAGGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGCGTTGTGGCCAAGATCAAGAGGGTTGTCATGGATAGGGATACTTATCCACGGAAATGGGGTTTGGGACCTAGAGCTTCCATGAAGAAGAAGCTTATTTCTGAAGGGAAGCTGGATAAGCATGGGAAGCCCAATGAGAAGACTCCCCAGGAGTGGCTTAGGAATCTTGTTTTGCCCACCGGTGGGGATAGTGTGATTGCTGGTATGGCTGCTGCGTCGGAGCCTGTGGATGAGAAGGTCAAGAAGGACGGAGATGGGGAAGGAAGGAAGAGGAAGAAGCATGAAAGCACTGATAGCCCAGTTTCGGTCCCTGTTAAGAAGGCGAAAGTGGATGTAGAAGAGGTAAAGGTGAAGAAGGTAGCTGATGAGGCTGTGGAGGTTGAAGTTGACAAAAAAGAAAAGAAGAAGAAAAAGAAGAAGGATAAGGATAGCAGTGAAGTGGCCTCCTCGGATGAGGAGAAAACAATGGAGAAGAAGAAGAAGCACAAGGATAAGGCTGAAGACGGTTCGCCGGAGTTAGACAAGTCTGAGAAGAAAAAGAAGAAAAAGAAAGACAAAGAAGCTGTTGCTGCTGCAGAAATTAGCAATGGAAAGGAGGATGACAGTAATGCTGATAAGAGTGAAAAGAAGAAGCATAAGAAAAAGAAAAGCAAAGATGAGGAAGAATAG 1728 0.5064 MSQSESKKKKERGTSKKEEEQAGKDEGLMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGHSPLKRPLPEYLKYGVINLDKPANPSSHEVVAWIKRLLKVEKTGHSGTLDPKVTGNLIVCINRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVGRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAHWDLTQGGRGESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGMAAASEPVDEKVKKDGDGEGRKRKKHESTDSPVSVPVKKAKVDVEEVKVKKVADEAVEVEVDKKEKKKKKKKDKDSSEVASSDEEKTMEKKKKHKDKAEDGSPELDKSEKKKKKKKDKEAVAAAEISNGKEDDSNADKSEKKKHKKKKSKDEEE* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1486 575 Gene3D Pseudouridine synthase 74 281 - -
Vra10g1486 575 Gene3D PUA domain 41 373 IPR036974 GO:0003723
Vra10g1486 575 Pfam DKCLD (NUC011) domain 41 98 IPR012960 -
Vra10g1486 575 Pfam TruB family pseudouridylate synthase (N terminal domain) 102 218 IPR002501 GO:0006396
Vra10g1486 575 Pfam PUA domain 290 362 IPR002478 GO:0003723
Vra10g1486 575 SMART pua_5 290 364 IPR002478 GO:0003723
Vra10g1486 575 MobiDBLite consensus disorder prediction 428 453 - -
Vra10g1486 575 ProSiteProfiles PUA domain profile. 289 364 - -
Vra10g1486 575 SUPERFAMILY Pseudouridine synthase 41 287 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra10g1486 575 SUPERFAMILY PUA domain-like 289 370 IPR015947 -
Vra10g1486 575 CDD PseudoU_synth_hDyskerin 80 261 - -
Vra10g1486 575 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 20 575 IPR004802 GO:0006396
Vra10g1486 575 TIGRFAM CBF5: putative rRNA pseudouridine synthase 48 374 IPR004802 GO:0006396
Vra10g1486 575 MobiDBLite consensus disorder prediction 1 26 - -
Vra10g1486 575 TIGRFAM unchar_dom_2: uncharacterized domain 2 285 361 IPR004521 GO:0003723
Vra10g1486 575 Pfam tRNA pseudouridylate synthase B C-terminal domain 219 286 IPR032819 -
Vra10g1486 575 MobiDBLite consensus disorder prediction 460 575 - -
Vra10g1486 575 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 20 575 - -
Vra10g1486 575 SMART DKCLD_2 40 98 IPR012960 -
Vra10g1486 575 MobiDBLite consensus disorder prediction 422 575 - -
Vra10g1486 575 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1486 Vra-Chr10 19786160 19788151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1486 4 462 NAC Transcription Factor Family AT3G57150 82.571 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1486 K11131 - gmx:100806355 825.854