Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1485 ATGGGTCTGCGTCATCTCTCAAACTCGATGACGCCATTGCCAGAACTCTGTGCCTCACTTTGTCATGTGAGGAAGTCCGAGCCTTGTTCATTAGATTGCAAAGTTTGCCTCAGGATCTGCTTCACCAATCCCCAATACCCTATTTATGATTCTCCTCCACCGCCGCCGCCGCCACCACTTCCCCTTTTCAATCCAGATAACGATGGCGCAGATGATACAAACAGCCACAAAATAGCCACCTATTTGTTCCTTGCTCTTGCTATTCTAACCGTTGCTTTCTTTGTCGTTTGTTGTCGCACCATCTATACCAGGTTCAGCTCGAGGAGGAGAGAATCATCAAGGCACCAGCCGGAGAACACCGCCGATGATGATTTTGTCGATGAAGAGCATGGACCTGTGGTGGATCACCCCATATGGTATATCCGAACCCTTGGGCTTCAGCAATCGATTATCAATGCCATCACAGTTTGTAGGTATAAGAAAGGTGAGGGCTTGATTGAAGGAACCGAATGTGCGGTTTGCTTGAGTGAGTTTGAAGAGGATGAAAATCTCAGACTTTTGCCTAAATGCTATCATGCTTTTCATTTACCTTGTATTGATACCTGGCTTAGGTCTCATACCAACTGTCCCATATGCCGGGCTCCCATTGTTTCTGACCTTGCAACTGCTAGGTCGGAGTCTAGTTTTGTTGATTCAAATTCCTTTGGACATACCCATGTGGAAATTTTGGAAAATAGTGCTCCTGATTCTGAATTAGGAAATAGGGCAGAGGAAGAGGGCCAAGTGGAGGCTGAGGATGGATTTAGGGTTTGTGAAACTGAAACCCCAGTTGAAGAGGTGCCAGGCATTCTTCCTAGAAGATCTGTTTCTCTGGATTCCTTTTCTGTTGCAAATATCAATCGTGCTCTTGCAACAGTGGGATCTAATGCTAACTCAAAAAGAATGCTGGGAAGCGTGGATGATGATGCTGCTGCTTCTTCTTCTTCTTCAAAGGTGGTTTCTGGAAGCGATTTGGCAAGCACTTCCAAAGGCAGCTCCTCTTTCAGGTTAACTAGGTATCTGCAGGGTGCTCCTGGTTCTTCAATGAAAAGGTCACAGTCCTATAATGGAAAGTACCTTCTGTCCTGGTACGGTCGCAATCAGAAGAAGCCAAATGCTCCTCTGAGAAACTTTTAG 1176 0.4592 MGLRHLSNSMTPLPELCASLCHVRKSEPCSLDCKVCLRICFTNPQYPIYDSPPPPPPPPLPLFNPDNDGADDTNSHKIATYLFLALAILTVAFFVVCCRTIYTRFSSRRRESSRHQPENTADDDFVDEEHGPVVDHPIWYIRTLGLQQSIINAITVCRYKKGEGLIEGTECAVCLSEFEEDENLRLLPKCYHAFHLPCIDTWLRSHTNCPICRAPIVSDLATARSESSFVDSNSFGHTHVEILENSAPDSELGNRAEEEGQVEAEDGFRVCETETPVEEVPGILPRRSVSLDSFSVANINRALATVGSNANSKRMLGSVDDDAAASSSSSKVVSGSDLASTSKGSSSFRLTRYLQGAPGSSMKRSQSYNGKYLLSWYGRNQKKPNAPLRNF* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1485 391 Pfam Ring finger domain 170 213 IPR001841 -
Vra10g1485 391 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Vra10g1485 391 SMART ring_2 171 212 IPR001841 -
Vra10g1485 391 CDD RING-H2_PA-TM-RING 170 213 - -
Vra10g1485 391 MobiDBLite consensus disorder prediction 323 344 - -
Vra10g1485 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 220 IPR013083 -
Vra10g1485 391 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 382 - -
Vra10g1485 391 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 382 IPR044675 -
Vra10g1485 391 SUPERFAMILY RING/U-box 165 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1485 Vra-Chr10 19784481 19792696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1485 62 217 C3H Transcription Factor Family AT1G72220 52.532 1.07e-48 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1485 - - gmx:100804758 537.339