Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1474 ATGGAGGGTCACGGAGGAGGGACGAGAGGGGAGGCGGAGCGCTGGCTCTACACGGCGAACAAGGTTTTAAGCGCACGTGACTTGCAGGGGGCTCGCTCATTTGCGATTCGGGCCCGAGAGTCCGACCCGAGATACGAGCCCACCCAGCTTCTTCTTACGGTTATCGATACCCTCATGGCCGGCGAGGCACGGATCAACGACCACCACGACTGGTACGCCATCCTCCAAGTCCTCCGTTACACTCAGAACATCGACTATATCGCCGTCCAGTACCGCCGCCTCGTCACCCAGCTCGACCCTCACCACAACCCATTTGCCTTCGCCGCTCACGCCTTCACTCTCGTCAACGACGCCTGGTCCGTACTCTCCAACTCCGCCAAGAAAGCCTTCTACGACAACCAACTCAGACTCCTCACTCAACCCCCACCCCCGCCTCCTCCTCCTCCTCCGCCTCCTCCACCGCCGCCGCAACCTCCCGCTCCTCCGGTTGCCTTCTTCCCGATTCAACCTCCGCAACCAAACTTAAACCCGAACCCGACCACGACCGCGTACCAAGTCCCTCAGCGGGAAAAAAACCCTAGGGCTTGGGTGGAGGAGGAGGTGGAGGTGCCGAGTCAGGAGGACAATGCGAACGAGTTGACTCGGGCGAGTGAGACCGGGAGCGAAGGGGCGAGTTTCTGGACCGCATGCCCTTATTGTTACGTTATGTACGAGTATCCGAAGGTGTACGTGGATTGTACGTTGCGGTGTCAGAGTTGTCGGAGGGGGTTTCATGCGGTGGTGGTACGGTCGCCGCCGAAAGATGGTTTTGGCTCGTTTAGCAGTTGGGGTTTTTTCCCTGTAGGGTTTTCTGGAGATTTTAGAGACATTAGCGGTTCTTCTTCGAAGTGGAACCCTTTTTCCCCTTTGATTCCTTGCGCTTTCAAAGGGGAGGTGCGGCAGAGTGGGAAGCACCGGAAGGGGCCTTATGTTTTCTACGACGATGACGCGTCTGCGGAGTTCGCGGAGGGTTCCGACACAACGAAGGACGATTCCGACGATGATGATTGGCATGGCGGGAATCAGAAGGGAATGGCGAAGAAGAGGACGGGGAAGAGGGGGAGGAAGAGGAGAAATGGTAATGGTGGTGATGTCAGGAGGGAACCGATTGAGAGGCCTAGGAGAGGGGTTCATAGTCATACTGGTGGTGATGAGGGGAATGTTAATGGGAATGTGGAGAGTGGTGAGGTTGCGGACGGTGACGGTGACGGTGTTGCGGCGGCGGCGGCAGATTCTGGTAAGAAGGGTGCGTTGGGTGGTTCTCGGAGGAGGAGTGAGAGGAACGTGGGGAAGTTAGATTTGAATGTAGAGTTCAGCAATGAGGTGGAGGAGTCATTGCATGAAGTGGATGAAGGGAATGAAAATGGGAATGCTGAGGATAATATTGAAGGGATTGGATTTTTTGAAGGGCTGGACGAGTTCCTCAGTAGCTTACCCATTCTGAATGCTGTTGCAGATGACAAGGTTAAGGGTCATTAG 1518 0.5599 MEGHGGGTRGEAERWLYTANKVLSARDLQGARSFAIRARESDPRYEPTQLLLTVIDTLMAGEARINDHHDWYAILQVLRYTQNIDYIAVQYRRLVTQLDPHHNPFAFAAHAFTLVNDAWSVLSNSAKKAFYDNQLRLLTQPPPPPPPPPPPPPPPPQPPAPPVAFFPIQPPQPNLNPNPTTTAYQVPQREKNPRAWVEEEVEVPSQEDNANELTRASETGSEGASFWTACPYCYVMYEYPKVYVDCTLRCQSCRRGFHAVVVRSPPKDGFGSFSSWGFFPVGFSGDFRDISGSSSKWNPFSPLIPCAFKGEVRQSGKHRKGPYVFYDDDASAEFAEGSDTTKDDSDDDDWHGGNQKGMAKKRTGKRGRKRRNGNGGDVRREPIERPRRGVHSHTGGDEGNVNGNVESGEVADGDGDGVAAAAADSGKKGALGGSRRRSERNVGKLDLNVEFSNEVEESLHEVDEGNENGNAEDNIEGIGFFEGLDEFLSSLPILNAVADDKVKGH* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1474 505 CDD DnaJ 70 124 IPR001623 -
Vra10g1474 505 ProSitePatterns Nt-dnaJ domain signature. 112 131 IPR018253 -
Vra10g1474 505 MobiDBLite consensus disorder prediction 335 443 - -
Vra10g1474 505 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 505 - -
Vra10g1474 505 MobiDBLite consensus disorder prediction 455 474 - -
Vra10g1474 505 SUPERFAMILY Chaperone J-domain 64 136 IPR036869 -
Vra10g1474 505 MobiDBLite consensus disorder prediction 370 394 - -
Vra10g1474 505 Gene3D DnaJ domain 59 140 IPR036869 -
Vra10g1474 505 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 5 505 - -
Vra10g1474 505 MobiDBLite consensus disorder prediction 335 356 - -
Vra10g1474 505 SMART dnaj_3 69 127 IPR001623 -
Vra10g1474 505 ProSiteProfiles dnaJ domain profile. 70 135 IPR001623 -
Vra10g1474 505 Pfam DnaJ domain 70 132 IPR001623 -
Vra10g1474 505 MobiDBLite consensus disorder prediction 138 177 - -
Vra10g1474 505 MobiDBLite consensus disorder prediction 136 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1474 Vra-Chr10 19712111 19713973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1474 11 504 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 36.863 5.04e-89 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1474 - - gmx:100818960 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1521 7 32895222 32897046 Vra10g1474 10 19712111 19713973 PCT