Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1473 ATGGCAAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAACGCGCGGCAAGTAACATTCTCAAAGAGGAGAAAAGGTCTTTTCAAAAAGGCTCAGGAACTGTCAACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCCGCAACCAGCAAGCTCTTTGAGTACGCCAGTTCAAGCATGCAACAAATAATTGAAAGGCGTGATCAGCATTCAGGTGTTCAAGGATCAGACATTCCATCCACTGGAAAACAGCTTGGAAGTAGCTCTTTTGACATGCTGCACAAGGAAATAGAAGAGAAGACTCATGAACTGTGTCAGTTGAACGGAGAAGACTTGCAAGGATTGACATTACAAGAGTTGCAGAAACTGGAGGAACTTCTCCTAAAACGTTGGATAACTATTTCAAAAATTAAGGAAGAAAAAATGACACAAGAGATCAACAGCCTTAAAACAAAGGAGGCCGAACTTACAGAAGAGAACCAGAAACTGAAGCAGAAGTTGGTTCCAGAACAGTGTTTTGAGTCAATTACTAGCAGTTCATATGATTTTCCTCCAGACAATGGTAGTTCTGACACATCTCTCAAGTTGGGGCTGTGTTTATTTGAGTGA 615 0.4114 MARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATSKLFEYASSSMQQIIERRDQHSGVQGSDIPSTGKQLGSSSFDMLHKEIEEKTHELCQLNGEDLQGLTLQELQKLEELLLKRWITISKIKEEKMTQEINSLKTKEAELTEENQKLKQKLVPEQCFESITSSSYDFPPDNGSSDTSLKLGLCLFE* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1473 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra10g1473 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra10g1473 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra10g1473 204 Coils Coil 141 168 - -
Vra10g1473 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 - -
Vra10g1473 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra10g1473 204 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vra10g1473 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra10g1473 204 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Vra10g1473 204 Pfam K-box region 91 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra10g1473 204 PANTHER - 1 172 - -
Vra10g1473 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra10g1473 204 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Vra10g1473 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vra10g1473 204 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1473 Vra-Chr10 19697443 19706898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1473 1 204 MADS-box Gene Family AT4G24540 50.000 4.82e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra10g1473 K-box 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1473 - - vun:114187603 312.768