Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1472 ATGCCCATGTCTTCCCTTCATCTTCTTCCTTTCGAGACAACCACAGTAGGGCACGATTTTCTGGTCTGCTTGATTTTGACGAAAATGGTGAGGAAGAAGATACCGATCAAGAAGATCGTGGACGTAACTGCGAGGCAGGTGACATTCTCAAAGAGAAAGGGTGGCCTTTTGAAGAAGGCACGTGAGCTTTCTCTTCTTTGCGATGCTGAGATTGCTCTCATAGTCTTTTCACCTGGTGGCAAACTCTTCGACTATGCAAGTTCAAGTATGCAGAAAATAACTGAAAGATATATTTTATTCTCAGAGTTGAACCTTGACAAACTAGACCAGTCATATCCTACGGAGCAGGGTAGAAGTAATTATGCTTCTTTGAACAAGGAATTGGAAGATAGGAGTCGTGAAATGAGACAGCTGAATGGAGAAGAGTTGGAAGGATTGACCCTAAAGGAACTACAGAAATTAGAAGAACGACTTGATTCATCCATGACCCGTCTTTATAAAACCAAGGTTCAAAATTTGTTAGCAGATATCAGCATACTTACGCAGAAGCAAAACAAACTCAAGGAAGATAACCTACTGATAAAACAGAGAATAAAGCATGTACAAGAGGAATCCTTTGACACCTCCCTTACATTGGGGCTACCTTTGCCATCTGCCTCAAAATAG 666 0.4144 MPMSSLHLLPFETTTVGHDFLVCLILTKMVRKKIPIKKIVDVTARQVTFSKRKGGLLKKARELSLLCDAEIALIVFSPGGKLFDYASSSMQKITERYILFSELNLDKLDQSYPTEQGRSNYASLNKELEDRSREMRQLNGEELEGLTLKELQKLEERLDSSMTRLYKTKVQNLLADISILTQKQNKLKEDNLLIKQRIKHVQEESFDTSLTLGLPLPSASK* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1472 221 ProSiteProfiles K-box domain profile. 114 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra10g1472 221 Coils Coil 170 190 - -
Vra10g1472 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677|GO:0046983
Vra10g1472 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 199 - -
Vra10g1472 221 ProSitePatterns MADS-box domain signature. 31 85 IPR002100 GO:0003677|GO:0046983
Vra10g1472 221 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Vra10g1472 221 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Vra10g1472 221 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Vra10g1472 221 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 29 199 - -
Vra10g1472 221 SUPERFAMILY SRF-like 31 107 IPR036879 GO:0003677|GO:0046983
Vra10g1472 221 Gene3D - 41 103 IPR036879 GO:0003677|GO:0046983
Vra10g1472 221 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
Vra10g1472 221 Pfam K-box region 115 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra10g1472 221 Coils Coil 121 141 - -
Vra10g1472 221 CDD MADS_MEF2_like 31 97 IPR033896 GO:0000977|GO:0045944
Vra10g1472 221 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1472 Vra-Chr10 19690507 19695095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1472 29 205 MADS-box Gene Family AT2G22540 48.045 7.11e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra10g1472 K-box 4.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1472 - - vra:106774983 409.838