Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1458 ATGATGTTCTTATTTCTTATGATCAGATTTGCAAACCCACTTTCATTTCGTCACCATGGATTTGAGTATAACGATACAAGGATTGAAGGAGATGCTGTTTTGTCACAATCAGAAATCCAACTCACTAAAACCACCAGATATCAGAGCAATGCTTACAGTGTTGGGAGAGTCACCAGTTTTGAAAGATTGCACCTTTGGGACAACATCACAGGAAAACTGACCGATTTCACTACCCAATTTTCCTTTGTCATTTTCTCAAACGAGACTAGTTTTGGAGATGGCTTGGCTTTTTTCTTAGCAGATCCAGGGCTTCCTCTTTCGAATCAAATACAACAAGGTGGTGGTCTTGGTCTTCTGGATGGTAACCAGTTATTGAATTCAGCTAAGCATCCATTTGTAGCTGTGGAGTTTGACACATTCCAAAATTCATGGGATCCACCTGGCACTCATGTAGGTATAAATTTCAACTCCATGAAATCTAACAAAACTGTTCCATGGTCCCTTGATATTAGGCAAATGAAAGTTTGTTATTGTGTGATTGAGTACAATGCAACTACTCAAATTTTAAATGTTTCTTTCTCTGGAAATGCCAAGCCAACAAAAAGATATATCTCATGCAATGTTGACCTGAGATATTACCTACCAGATTGGGTTATATTTGGTTTCTCAGCTGCTACAGGAGTTATGTTTGAGTTGAACACACTGCTGTCATGGTCATTCCATTCAACTTTACAAAGTAATAAGAATCTCTCAAATAAGATACCTCCAATTGCAGTCTCACCAAGCCCAAATCCTAGTCCTTCACCATTTTCCACTGACACTATTAGATCTAAACAAGAGGGAAACAAAGGTTTATTGATGGGACTAGAAGTTGGTGTAGGCATAGCTGCAACTTTCCTTATTTTAGGGTTGGTTTGTGTTTTAATGTGGAAGAGGAGGGCTAAAGGGAAAAGAGAAGATTCAATTCTTGATCTGAGCATGGATGATGAATTCCAAAAGGGCATTGGACCCAAAAGATTTTGCTATAAGGAATTGGCAACTGCAACAAGAAACTTTGCAGAGTCACAAAAGATTGGACAAGGTGGTTTTGGGGGTGTGTATAAAGGCTATTTGAAAGAATTGAACACCAACGTTGCTATAAAGAGGATATCAAGAGAATCTAAACAAGGAGCAAAGGAATATGCAAGTGAAGTTAAGATCATCAGCAGACTAAGGCACAGGAATTTAGTGCAATTAATTGGTTGGTGCCACATGAAGAAAGATCTCCTTCTTATATATGAGTTCATGCAAAATGGTAGCTTAGATTCCCATCTATACAGTGGAAAAAGCATCTTGACATGGCAGATGAGGTACAACATTGCCATGGACTTGGCTCTGGCAGTGTTGTACCTTCATGAAGAATGGGAGCAGTGTGTGCTTCATAGGGACATTAAATCCAGCAACATTATGTTGGATTCAAATTTCAATGCTAAGCTTGGGGATTTTGGCTTAGCCAGGCTTGTTGATCATGAGAAAGGATCCCAAACTACAATTCTAGCAGGGACAAGAGGCTACATAGCCCCGGAATACTTCACTACAGGGAAGGCTAGGAAGGAATCTGATATATACAGTCTTGGGATTGTTTTACTGGAATTAGCCACTGGAAGAAAACCAGTTGACCTGAATGCCATGGAAGGCCAAATAACCATATTTGAGTGGGTTTGGGAGCTCCACCAATTGGGAAAGTTACTTGAAGTGGTAGACAAAAAGCTTGGAGGAGCATTTGATGAGGAACAGATGAAACGTTTAGTGATTGTTGGCCTTTGGTGTGCCAATCCAGATCATACATCCAGACCATCAGTAAGGCAATTGATTCAAGTGCTTAAGTTTGAAGCTCCTTTACCAGTTCTTCAACAAAAATTGTCTGAACCTTATTATCATTCTCCAACTATGAGTACAATATTTGCTTCAATTTCTTCTCCCTACACGTTAGAACCAAATACAATGTAA 1989 0.3937 MMFLFLMIRFANPLSFRHHGFEYNDTRIEGDAVLSQSEIQLTKTTRYQSNAYSVGRVTSFERLHLWDNITGKLTDFTTQFSFVIFSNETSFGDGLAFFLADPGLPLSNQIQQGGGLGLLDGNQLLNSAKHPFVAVEFDTFQNSWDPPGTHVGINFNSMKSNKTVPWSLDIRQMKVCYCVIEYNATTQILNVSFSGNAKPTKRYISCNVDLRYYLPDWVIFGFSAATGVMFELNTLLSWSFHSTLQSNKNLSNKIPPIAVSPSPNPSPSPFSTDTIRSKQEGNKGLLMGLEVGVGIAATFLILGLVCVLMWKRRAKGKREDSILDLSMDDEFQKGIGPKRFCYKELATATRNFAESQKIGQGGFGGVYKGYLKELNTNVAIKRISRESKQGAKEYASEVKIISRLRHRNLVQLIGWCHMKKDLLLIYEFMQNGSLDSHLYSGKSILTWQMRYNIAMDLALAVLYLHEEWEQCVLHRDIKSSNIMLDSNFNAKLGDFGLARLVDHEKGSQTTILAGTRGYIAPEYFTTGKARKESDIYSLGIVLLELATGRKPVDLNAMEGQITIFEWVWELHQLGKLLEVVDKKLGGAFDEEQMKRLVIVGLWCANPDHTSRPSVRQLIQVLKFEAPLPVLQQKLSEPYYHSPTMSTIFASISSPYTLEPNTM* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1458 662 CDD STKc_IRAK 358 622 - -
Vra10g1458 662 PANTHER LECTIN RECEPTOR KINASE 7 654 - -
Vra10g1458 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vra10g1458 662 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Vra10g1458 662 Pfam Legume lectin domain 14 250 IPR001220 GO:0030246
Vra10g1458 662 CDD lectin_legume_LecRK_Arcelin_ConA 14 244 IPR001220 GO:0030246
Vra10g1458 662 ProSitePatterns Legume lectins alpha-chain signature. 214 223 IPR000985 -
Vra10g1458 662 SUPERFAMILY Concanavalin A-like lectins/glucanases 13 247 IPR013320 -
Vra10g1458 662 Pfam Protein kinase domain 353 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1458 662 Gene3D - 12 256 - -
Vra10g1458 662 Gene3D Transferase(Phosphotransferase) domain 1 429 641 - -
Vra10g1458 662 SMART serkin_6 352 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1458 662 SUPERFAMILY Protein kinase-like (PK-like) 336 651 IPR011009 -
Vra10g1458 662 ProSiteProfiles Protein kinase domain profile. 352 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1458 662 ProSitePatterns Legume lectins beta-chain signature. 133 139 IPR019825 -
Vra10g1458 662 Gene3D Phosphorylase Kinase; domain 1 337 428 - -
Vra10g1458 662 PANTHER - 7 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1458 Vra-Chr10 19607350 19609352 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1458 1 640 Receptor kinase-like Gene Family AT5G10530 44.360 2.00e-172 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra10g1458 Pkinase 5.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1458 - - gmx:100814713 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1551 7 33485023 33487637 Vra10g1458 10 19607350 19609352 PCT
Vra10g1458 10 19607350 19609352 Vra7g1554 7 33590306 33592240 PCT