Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1456 ATGGGCATTTTTCCATTTCTACGAAAAAATATGAGTTCCAAAGGTGTTGATGAGCAGTGCCTGGGATGGGCGGCAAGAGATGCATCCGGAGTTTTATCACCTTACAAATTCAGTCGCAGGAATCTTGGGAACGAAGATGTTCATATTAAAATTACACACTGTGGTGTTTGCTACGCTGATGTAGTTTGGACAAGGAATAAACATGGCGACTCAAAGTATCCTGTTGTGCCTGGTCATGAGATTGCTGGGATTGTGACAAAGGTTGGCCCTAATGTCCACCGTTTCAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCTTGTAGGGATTGTGAGTATTGTAACGAAAAACAAGAAGTTCTTTGTACCAAGGGATCAGTATTCACTTTTAACGGTGTTGATTTTGATGGTACAATAACAAAAGGAGGATACTCAAGTTACATAGTAGTCCATGAGAGGTACTGCTTCACGATACCAAAAAACTATCCATTGGCTTCAGCAGCTCCTTTGCTTTGTGCTGGGGTTACTGTTTATTCTCCTATGGTGCGCCACAAGATGAATCAACCTGGAAAATCTCTTGGGGTGATTGGTCTTGGTGGCCTTGGTCATATGGCAGTGAAATTCGGAAAGGCATTTGGTTTGAGTGTAACAGTTTTTAGCACTAGTTTGTCCAAGAAAGAAGAGGCACTGACCTTGCTTGGTGCAGACAAATTCGTTGTTTCATCTAATCAAGAGGAAATGAAGGCGTTGGCTAAATCGCTGGACTTTATAATCGACACAGCATCCGGTGATCACCCATTTGATCCTTACATGTCACTTTTGAAGCCATATGGTGTTTTTGTCTTAGTTGGTTTCCCTAGTGAAATCAAATTCAGCCCTGCAAGCCTTAATATAGGATCAAAGACTTTTGCCGGAAGCATTACAGGTGGTACAAAAGATACACAAGAGATGATTGACTTCTGTGCTGCAAACGATATTCACCCAAATATAGAGGTGATTCCAATCGAGTATGCCAATGAAGCTCTTGAGAGGCTCGTAAATAGAGACGTCAAATACCGTTTTGTAATTGATATTGCGAACTCCCTAAAAGAAAATTAA 1104 0.4149 MGIFPFLRKNMSSKGVDEQCLGWAARDASGVLSPYKFSRRNLGNEDVHIKITHCGVCYADVVWTRNKHGDSKYPVVPGHEIAGIVTKVGPNVHRFNVGDHVGVGTYVNSCRDCEYCNEKQEVLCTKGSVFTFNGVDFDGTITKGGYSSYIVVHERYCFTIPKNYPLASAAPLLCAGVTVYSPMVRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSLSKKEEALTLLGADKFVVSSNQEEMKALAKSLDFIIDTASGDHPFDPYMSLLKPYGVFVLVGFPSEIKFSPASLNIGSKTFAGSITGGTKDTQEMIDFCAANDIHPNIEVIPIEYANEALERLVNRDVKYRFVIDIANSLKEN* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1456 367 SMART PKS_ER_names_mod 30 358 IPR020843 GO:0016491
Vra10g1456 367 PANTHER - 12 364 - -
Vra10g1456 367 Gene3D - 175 330 - -
Vra10g1456 367 PANTHER ALDEHYDE REDUCTASE 12 364 - -
Vra10g1456 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 328 IPR036291 -
Vra10g1456 367 CDD CAD1 22 359 - -
Vra10g1456 367 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Vra10g1456 367 SUPERFAMILY GroES-like 26 193 IPR011032 -
Vra10g1456 367 Pfam Zinc-binding dehydrogenase 202 324 IPR013149 -
Vra10g1456 367 Gene3D - 23 360 - -
Vra10g1456 367 Pfam Alcohol dehydrogenase GroES-like domain 45 159 IPR013154 -
Vra10g1456 367 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 195 222 IPR029752 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1456 Vra-Chr10 19594073 19596716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1456 12 365 Monolignol Biosynthesis Gene Families AT1G72680 75.989 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1456 K00083 - gmx:100807617 676.781