Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1455 ATGGGGAATGGAGGTTTTAGCACACTAACTCTTATCTTGTGCTATGCAATGGCAACCGTTTCATTCCTCCCTCGTACAAATACACTATCGTGTAGCTACCTCACGTTCTGGGAAAATGATGCATGGCTGCAACTGCGAGGAGATGCAGCAGTTTCAGGTTCAGAAATCCAAGTCACATCTAACAGGGAAGGAAATAACAACAGTTACAGTGTTGGACGTGTCACACCTATTATAATGATGCATCTCTGGGATAAGAGTTCTGGGAAACTTGCAGACTTCACTACCCACTTTTCGTTCTCTGTTTATTCAAATGAACTTCAGTTTGGAGATGGGTTGGCATTCTTTTTGGCGGATCCTGGGCTTCCACTTTTGAATAACATCACGGAAGGTGGTGGTCTTGGCCTTGTGGATGGTGACAGAGTGTTGAACTCAACTCAACACTCATTTGTGGCAGTGGAGTTTGACACCTTCCAGAATCCATGGGACCCCGAAGACCCTCATGTAGGTATGAACTTCAACTCTATGAAGTCCAATGTAACTGCATCATGGTTAGCTGTTTTGTCACAAGATGAGGTTTATAATTGTAGCATTGAGTACAATTCCACCACTTTTTGTTTAACTGCTTCTTTCACCGGCTACTATTACCCAAAATATGGTCGGATACAAAATAGCCTTTCGTACAAAGTTGATTTGAGAAAGCACTTACCAGAGAGGGTTATGGTTGGCTTTTCCGCAGCTGCGGGATATTATGTTGAGGAGCATATTCTGAAGTCATGGTCGTTTAGTTCAGGCTTAGAAATAGAAATTGGTGATACTTCCGGTGATGATAATAAAGTAGTTGAGTGGGTAGGAATTGGGATAGGTTTGGGGGTTTTCTTAGGATTGGCTTGTTTTCTGATGTGGAGAAGGATAAAAGGGAATGAAAAAGTGTTGGAATTTGATCTAAAAATGGATGATGAGTTCCAAAAGGGAATAGGACCCAAGAGGTTTCGCTACAATGAACTCGAAAGTGCAACAAGTAGATTTTCAGAGTCGGTGAAGCTTGGACAAGGAGGCTTCGGTGGCGTGTATAAAGGTTTTCTGAAGGATTTAAACTCCTACGTTGCCATCAAGAGGGTATCGAGAGAATCAAAGCAGGGGGTTAAGGAATATGCTACTGAAGTTAAGATCATTAGCCAGTTGAGGCACAAGAATCTGGTGCAACTCCTTGGTTGGTGCCATAGAGAAAAAGATCTCCTTCTTGTATATGAATTCATGCCAAACGGAAGCTTAGATTTCCATTTATATGGGAAGGGTTTCTTGACATGGTCAGTGAGGTATAACATAGCTCTAGGCTTGGCTTCAGCGTTGCTATACCTGCAAGAAGAGTGGGAACAATGTGTTCTTCACAGGGACATTAAATCAAGCAACATAATGTTGGATTCGAGCTTCAACGCAAAGCTTGGTGATTTTGGTTTGGCTAGGTTGGTTGATCATGAAAAGGGGTCACAAACGACGTTTATAGCCGGGACAAGAGGCTACATTGCACCAGAATATGTGACCACAGGGAAAGCTTATAAGGAATCTGATATATACAGTTTTGGGGTTGTGTTATTGGAGATAGCGAGTGGAAGAAAAGCCATTGATCTAAAGGCACAGGAGGGGAAGATATCAATAGTAGAGTGGGTTTGGGAGATGTATGAATTGGGAGAGATGTTGAAAGTTGCAGACCCAAAACTGTGTGGAGCATTTCATGATGAACAGATGAAAAGGTTAGTGGGCATAGGTCTTTGGTGTGCTCATCCAAATTACAGATTCAGGCCTTCTGTCATGCAAGTCATTCAAATGCTTAAATTTGAAGCTGAATTGCCAACTCTCCCAAAGTGGCTACCTGTTCATAATTTCTATCCTTCAACAATAAAAATAAATTTTTCATCGTCTTCAAACACTGTACCTACCCAACAAATTTTATAG 1953 0.4178 MGNGGFSTLTLILCYAMATVSFLPRTNTLSCSYLTFWENDAWLQLRGDAAVSGSEIQVTSNREGNNNSYSVGRVTPIIMMHLWDKSSGKLADFTTHFSFSVYSNELQFGDGLAFFLADPGLPLLNNITEGGGLGLVDGDRVLNSTQHSFVAVEFDTFQNPWDPEDPHVGMNFNSMKSNVTASWLAVLSQDEVYNCSIEYNSTTFCLTASFTGYYYPKYGRIQNSLSYKVDLRKHLPERVMVGFSAAAGYYVEEHILKSWSFSSGLEIEIGDTSGDDNKVVEWVGIGIGLGVFLGLACFLMWRRIKGNEKVLEFDLKMDDEFQKGIGPKRFRYNELESATSRFSESVKLGQGGFGGVYKGFLKDLNSYVAIKRVSRESKQGVKEYATEVKIISQLRHKNLVQLLGWCHREKDLLLVYEFMPNGSLDFHLYGKGFLTWSVRYNIALGLASALLYLQEEWEQCVLHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTFIAGTRGYIAPEYVTTGKAYKESDIYSFGVVLLEIASGRKAIDLKAQEGKISIVEWVWEMYELGEMLKVADPKLCGAFHDEQMKRLVGIGLWCAHPNYRFRPSVMQVIQMLKFEAELPTLPKWLPVHNFYPSTIKINFSSSSNTVPTQQIL* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1455 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Vra10g1455 650 SMART serkin_6 342 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1455 650 Pfam Protein kinase domain 343 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1455 650 ProSitePatterns Legume lectins beta-chain signature. 150 156 IPR019825 -
Vra10g1455 650 CDD lectin_legume_LecRK_Arcelin_ConA 29 265 IPR001220 GO:0030246
Vra10g1455 650 Pfam Legume lectin domain 30 264 IPR001220 GO:0030246
Vra10g1455 650 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Vra10g1455 650 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE 42 643 - -
Vra10g1455 650 Gene3D Transferase(Phosphotransferase) domain 1 419 630 - -
Vra10g1455 650 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
Vra10g1455 650 Gene3D - 27 273 - -
Vra10g1455 650 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 265 IPR013320 -
Vra10g1455 650 ProSiteProfiles Protein kinase domain profile. 342 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1455 650 CDD STKc_IRAK 348 611 - -
Vra10g1455 650 PANTHER - 42 643 - -
Vra10g1455 650 ProSitePatterns Legume lectins alpha-chain signature. 235 244 IPR000985 -
Vra10g1455 650 SUPERFAMILY Protein kinase-like (PK-like) 326 630 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1455 Vra-Chr10 19591338 19593299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1455 12 629 Receptor kinase-like Gene Family AT5G10530 44.741 4.39e-169 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra10g1455 Pkinase 5.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1455 - - gmx:100780181 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1555 7 33608386 33610296 Vra10g1455 10 19591338 19593299 PCT
Vra10g1455 10 19591338 19593299 Vra7g1556 7 33661734 33663953 PCT