Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1446 ATGGAGAATTATTCATACCAATCATACCCTGATTCTGGCGACTCCTCTCCACGCTCCAGAGAGATCGACTTTGACAACCCTCCTCCTCCATGGGACGAACAACAACAACAACAGAATTACAAGGTAAAGTTCATGTGCAGCTACGGCGGCAAGATCCACCCGCGCTCCCACGACAACCAACTGTCATACGTCGGCGGCGAGACCAAGATCCTCGCCGTGGACCGCTCCATAAAGTTTGGAGCCCTGCTGGCCAAGCTCTCGGCCCTCTGCGAGGTGGCGCCACAAGAAAGCAACGGCAGCAGCCTCACCTTCAAGTACCAGCTCCCTGGCGAAGACCTCGACGCTCTTATCTCTGTCACCAACGACGACGACCTCGACCACATGATGCACGAGTACGATCGCCTCTACCGCGCTTCCGCTAGACCCGCCCGCATGCGATTATTCCTCTTTCTCGCCGATACTCTTCCTTCTCCGCTTCCTGCTTCCGCACCGCTCCAAACTGTGATTAAACCAAATAACGTCGATTTCCTCTTCGGTCTCGAGAAGGGCGCCGGTGTCGCCGTCGCAGCTCAGCCGGCTCAGATTCCACCTGCGGCAGTCAAATTTCATGATCCGGTGCCGGAGCCCGTCGCGCCACCGCCGGAGTACCAGTCTCGGCTGAATTTAAACCCCGTGGACAGGGTTTCGGCCTCGGATCCGAGCGCGATTCAGCGCCAGTTGCAGCAGTTGCAAATTGCGGAGAGCGAGCAAGGCGCGTACCGGAGGAAGAGCGAGGAGAATTACCCTGCCGGTGATTATTACGTTCAGAAGCTGCCAGAGAAGTTCACTCCGGCGAATTTACCACCGAACACCCAGGGATATTGGTCGGAAAAGCATGTTTCCGGCGAAGCCTATCCACCGGCGGTGTCCGCTGCATCCGGTGGAGGAGATGGGCCGGTTTACATGATACCGGCGCCGGGGACGTTCTATCATGCGCCGGTGGTGCGGCCTCCAGCCACCCAGGGGTACTACGCGGTGCAGCGAATGGCTTCAGATGGTTACCGTGAAGCGGCAGTGTACGGCGGTGTCACGCAGGCAAAAACGGCGGCTCAAGCAAGCTTGGCGCCAGGGCAGCAACAGGTTAAGACTCCCGCGTATACGGAAGGATTCGGTATGATGCGGCCAAGTGCGATAGTGGATAATACGGGTGCGCCGTACGCACAGGTAGCGTACGATAGTGCAGGTGGGAGACAGGTTTATTATACTGCACCGGGTGGCGTAGTGCACGCTCCTCCGTACCAAGGCGTTTTTCCACCGGTCACCTCTGATCTGAGACAAACTGCGGTGACCTTGGGTCAAGATGTTAAAGTGTTGAACAAAGTTACCCAAGGTTCAGTGTGA 1380 0.5717 MENYSYQSYPDSGDSSPRSREIDFDNPPPPWDEQQQQQNYKVKFMCSYGGKIHPRSHDNQLSYVGGETKILAVDRSIKFGALLAKLSALCEVAPQESNGSSLTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPARMRLFLFLADTLPSPLPASAPLQTVIKPNNVDFLFGLEKGAGVAVAAQPAQIPPAAVKFHDPVPEPVAPPPEYQSRLNLNPVDRVSASDPSAIQRQLQQLQIAESEQGAYRRKSEENYPAGDYYVQKLPEKFTPANLPPNTQGYWSEKHVSGEAYPPAVSAASGGGDGPVYMIPAPGTFYHAPVVRPPATQGYYAVQRMASDGYREAAVYGGVTQAKTAAQASLAPGQQQVKTPAYTEGFGMMRPSAIVDNTGAPYAQVAYDSAGGRQVYYTAPGGVVHAPPYQGVFPPVTSDLRQTAVTLGQDVKVLNKVTQGSV* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1446 459 SUPERFAMILY CAD & PB1 domains 57 153 - -
Vra10g1446 459 MobiDBLite consensus disorder prediction 1 36 - -
Vra10g1446 459 MobiDBLite consensus disorder prediction 1 15 - -
Vra10g1446 459 Gene3D - 62 152 - -
Vra10g1446 459 SMART PB1_new 56 152 IPR000270 GO:0005515
Vra10g1446 459 CDD PB1_UP2 45 150 - -
Vra10g1446 459 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 1 453 - -
Vra10g1446 459 Pfam PB1 domain 57 150 IPR000270 GO:0005515
Vra10g1446 459 PANTHER OS05G0427100 PROTEIN-RELATED 1 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1446 Vra-Chr10 19490623 19492423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1446 40 150 MAP Kinase Kinase Kinase AT5G57610 46.847 3.72e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1446 - - pvu:PHAVU_006G199200g 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1562 7 33787060 33788863 Vra10g1446 10 19490623 19492423 PCT