Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1438 ATGAGGAGTTTTCATATGGAGATTTCATCAATCAGAGGGTTACCTGAACTGGGGATAATAGAGGATCCTAACTTTCTCCATCAGTGGCAGTTAAACCCAGCTAATACAAGTAGTTTAACAGGAGCTGCTTTTGGTGAGAGTTTGCAGAAGCTCTCATTTTCTGGCAACTCAAACTTCAACCCCAAAGCATCCATGGAAGCATCACCAAATGGAAATGAAAGACCAACAAAACATCTCAGAAACAACAGCTGGAATGGCAAGAAAAGTCAACATCAGACACCAGAGACACAATATGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACATAAATGAATTGGGACTAGGGAAGCCTAAGGTGGAAATGGCGTGTCCTAAAATTGATACTAAAATTGATAATAGTACCCTTGCAGAGATGCTGGTCTCTCAAGGAACTTTGGTAAATCAAAACTATCACTTCAAGGCCAACCAGGAGGCCATAAAGATTGAAACACGTCCAAAGCTTTCTCAACCTCAGGACCACATAATAGCTGAAAGGAAGAGGAGAGAGAAACTCAGCCAACGGTTCATTGCTCTATCTGCTCTCGTTCCTGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCAGTGAAGTACTTGCAACAGTTGCAAGAGAAAGTGAGTACTCTTGAGGAGGAACAAAACAGAAAGAGAACTGTGGAATCTGTTGTAACTGTGAAGAAATCTCAGCTATCCAATGATGCTGAAGACTCTTCTAGTTCAGATACCGGTGGTACATTGGACGAGGCACTACCTGAAATTGAAGCAAGATTTTGCGAAAGAAATGTGCTCATAAGAATACACTGTGAGAAGAAAAAAGGAATCATAGAGAAAACGATCAGCGAAATTGAGAAACTCCATTTAAAAGTTACCAATAGCAGTGCATTGTCATTTGGGAGTTTCATTCTTGATATAACTATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTCGTGAGAAGTTTACGCTCAACATTTTCATATTAG 1053 0.3989 MRSFHMEISSIRGLPELGIIEDPNFLHQWQLNPANTSSLTGAAFGESLQKLSFSGNSNFNPKASMEASPNGNERPTKHLRNNSWNGKKSQHQTPETQYASCSNLLSFVNSNYINELGLGKPKVEMACPKIDTKIDNSTLAEMLVSQGTLVNQNYHFKANQEAIKIETRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAVKYLQQLQEKVSTLEEEQNRKRTVESVVTVKKSQLSNDAEDSSSSDTGGTLDEALPEIEARFCERNVLIRIHCEKKKGIIEKTISEIEKLHLKVTNSSALSFGSFILDITIIAQMDMEFCMTVKDLVRSLRSTFSY* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1438 350 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983
Vra10g1438 350 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 7 349 - -
Vra10g1438 350 MobiDBLite consensus disorder prediction 59 95 - -
Vra10g1438 350 Gene3D - 171 246 IPR036638 GO:0046983
Vra10g1438 350 SMART finulus 178 227 IPR011598 GO:0046983
Vra10g1438 350 Coils Coil 211 238 - -
Vra10g1438 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Vra10g1438 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 249 IPR036638 GO:0046983
Vra10g1438 350 PANTHER BHLH TRANSCRIPTION FACTOR 7 349 - -
Vra10g1438 350 CDD bHLH_AtNAI1_like 175 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1438 Vra-Chr10 19432545 19435549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1438 172 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 60.000 8.96e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra10g1438 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1438 - - gmx:100798018 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1569 7 33960930 33963412 Vra10g1438 10 19432545 19435549 PCT