Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1435 ATGGTCGCCGGAAGTAATTTCCGGTACTGCTCGGCGCCCATTATTCCCACTACTGCCCTGTTATTCCTCTGCCTCGTTGCTTCTTCCCTCGCAGATGAACTTCAACCACTCATGAAGTTCAAGTCCTCCATACAAAGTTCAAATGTAACTGTTTTTAATTCATGGGCACAAGCAAGTTCTCCGTGCCTATTCTCTGGGATTGTATGCAACTCCAAAGGCTTTGTTTCAGAAATCAATCTTCCGGAGAAACAGCTGGAGGGTACTGTTCCCTTTGATTCACTTTGTGAGCTTCAATCGCTTGAGAAGATATCTTTGGGGTCTAACCAGTTGCATGGAAGCATCAGTGAGGGGTTGACGAAGTGCACCAACTTGAAGCATTTGGATTTGGGTATGAATTCATTCAATGGAGTAGTGCCTGATTTGTCGAGTTTGCACAAGTTGGAGTTCTTGAATTTAAACTCCAGTGGAATTTCAGGAGTGTTTCCATGGAAATCATTGGGAAATCTAACTAGTCTTCAGTTCCTGAGTCTTGGGGATAACCTGTTGAAGGAAGATCCTTTCCCTTTGGAGGTGTTAAAACTTGAAAAATTGTATTGGCTTTACCTCACAAATTGCAGCATCACTGGGAATATTCCATTGGGGATTGGGAATCTTACTCAGCTTCAGAATCTTGAGCTTTCTGACAACCATTTGTATGGTGAGATTCCTGCTGATATAGTAAAGCTTCGCAAGCTGTGGCAACTTGAGTTATATGATAACTATCTGAGTGGGAAAATCCCAGTTGGATTTGGAAACCTGACTAGTCTAGTTAACTTTGACGCTTCTTATAATCAACTTGAAGGTGATCTTTTTGAGGTAAGGTCCTTAAAAAACCTTGAATCCCTTCAACTTTTTGGGAACAAGTTGTCTGGAGAAATTCCAAAGGAGCTTGAAGATCTCAAGAATCTCACAGAGCTTTCTCTTTATGCTAACAACCTCACTGGTCCTCTTCCTCAAAAGCTTGGCTCTTGGCAAGGCATGCAATACGTTGATGTTTCAGACAATTTTCTTTCTGGCCCAATACCACCTTTCCTGTGCAAGAACAATCAAATCAATGAACTGGCACTCTTGAACAACAGCTTCAATGGAACAATACCAGAAACGTATGCAAAATGCACATCTTTGGTTCGTTTTCGTCTGAGCAGAAACTCACTTTCGGGTGTAGTTCCTTCAGGCATATGGGGCTTGCCAAATTTGGTTCTGTTTGATCTTGCAATGAACCAGTTTGAAGGTCCAGTGACATCTGATATAGCCAAAGCAAAATCTCTGGCTCAACTGTTGCTATCTAACAATAAATTCGCAGGTGAGTTACCGATGGAAATCTCTGAAGCTTCTTCATTGGTGACAATTCAGCTAAGTTCAAATCAAATTTCTGGTAACATCCCAGAAAACATTGGAAAGTTGAAGAAACTAACCACTCTTACTTTAGATGGAAACAATCTTTCTGGTGTCGTACCGGATTCCATTGGTTCTTGTATTTCTCTTAATGAGATAAACCTTGCTGGCAACTCTCTTTCTGGGGCTATACCAGGTAGCATCGGTTCTCTTCCAACTCTCAATTCATTGAACTTGTCCTCAAACAGGCTTTCTGGTGAAATTCCATCCAGTTTATCGTCTCTGAGACTTAGCCTTCTTGACTTATCAAACAATCAGTTGTTTGGTTCCATACCAGAACCTCTTTCTATTTCAGCCTTCAAAGACGGATTCATGGGAAATCCTGGCTTATGCAGCCAGACTTTGAAAGGTATCAGACCATGTTCAATGCAATCCAGAAGCTCCAGGAGACTCAGAAACCTTTTAGTCTGTTTCCTTGCTGCTGTAATGGTTCTGCTTGGAGCGTTTTTCCTCTTCACAAAACTAAGGCAGAATAAGTCTGAGAAGCCGCTGAAGACTACTTCCTGGGATGTCAAGCAGTACCATGTGTTAAACTTCAATGAGAGTGAAATCGTTAACGGGATCAAGGCTGAGAATTTGATTGGCAAGGGAGGATCCGGCAATGTTTATCGTGTTGTGCTTAAAGGTGGGGCAGAATTTGCAGTGAAACACATATGGACTTCAAATCTAAGCGACAGGGGAAGTTGCAGGAGCACCTCAACTATGCTTAGAAGGAGTTCAAGGTCACCAGAATTTGATGCAGAAGTGGCCACTCTTAGCTCTATAAGGCATGTAAATGTTGTGAAGCTCTATTGTAGCATCACAAGTGAAGACAGCAGTTTGCTTGTCTATGAATTTTTACCAAATGGGTGCTTGTGGGACAGGTTGCACACCTGTAAAGAGAAGTCTAAGATGGGGTGGGAGGTTAGGTATGACATTGCATTGGGTGCTGCTAGAGGATTGGAGTACCTGCACCATGGGTGTGATAGACCAGTTATACATAGGGATGTCAAATCCAGTAACATATTGCTGGATGAAGAATGGAAGCCAAGGATTGCAGATTTTGGCCTTGCCAAGATTCTGAGTGGAGGAGCAGGCAATTGGACCAATGTCATTGCTGGAACACTTGGTTACTTACCTCCTGAGTATGCCTACACTTGTAAGGTGACAGAGAAGTGTGATGTTTACAGCTTTGGTGTTGTCCTGATGGAGTTGGTAACTGGGAAGAGGCCAATGGAGCCAGAGTTTGGAAACAATCATGACATTGTGCATTGGGTATGCAGCACTAACAGGAGCAAAGAAGAGGCTCTTGAATTGGTGGATCCTACTATTGCAGAACATTTCAAAGAGGATGCCATGAAGGTGTTGAGAATTGCATTATTGTGCACTGCCAAAATTCCAGCTTCAAGACCATCAATGAGAACGTTAGTTCATATGCTGGAAGAGGCAGATCCATGTACCCCAAACAAAATGATTGTGACCGTTGATGCTTAA 2907 0.4259 MVAGSNFRYCSAPIIPTTALLFLCLVASSLADELQPLMKFKSSIQSSNVTVFNSWAQASSPCLFSGIVCNSKGFVSEINLPEKQLEGTVPFDSLCELQSLEKISLGSNQLHGSISEGLTKCTNLKHLDLGMNSFNGVVPDLSSLHKLEFLNLNSSGISGVFPWKSLGNLTSLQFLSLGDNLLKEDPFPLEVLKLEKLYWLYLTNCSITGNIPLGIGNLTQLQNLELSDNHLYGEIPADIVKLRKLWQLELYDNYLSGKIPVGFGNLTSLVNFDASYNQLEGDLFEVRSLKNLESLQLFGNKLSGEIPKELEDLKNLTELSLYANNLTGPLPQKLGSWQGMQYVDVSDNFLSGPIPPFLCKNNQINELALLNNSFNGTIPETYAKCTSLVRFRLSRNSLSGVVPSGIWGLPNLVLFDLAMNQFEGPVTSDIAKAKSLAQLLLSNNKFAGELPMEISEASSLVTIQLSSNQISGNIPENIGKLKKLTTLTLDGNNLSGVVPDSIGSCISLNEINLAGNSLSGAIPGSIGSLPTLNSLNLSSNRLSGEIPSSLSSLRLSLLDLSNNQLFGSIPEPLSISAFKDGFMGNPGLCSQTLKGIRPCSMQSRSSRRLRNLLVCFLAAVMVLLGAFFLFTKLRQNKSEKPLKTTSWDVKQYHVLNFNESEIVNGIKAENLIGKGGSGNVYRVVLKGGAEFAVKHIWTSNLSDRGSCRSTSTMLRRSSRSPEFDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGCLWDRLHTCKEKSKMGWEVRYDIALGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKILSGGAGNWTNVIAGTLGYLPPEYAYTCKVTEKCDVYSFGVVLMELVTGKRPMEPEFGNNHDIVHWVCSTNRSKEEALELVDPTIAEHFKEDAMKVLRIALLCTAKIPASRPSMRTLVHMLEEADPCTPNKMIVTVDA* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1435 968 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Vra10g1435 968 SUPERFAMILY L domain-like 288 618 - -
Vra10g1435 968 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 961 - -
Vra10g1435 968 Gene3D Ribonuclease Inhibitor 189 287 IPR032675 -
Vra10g1435 968 SMART serkin_6 666 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1435 968 Pfam Protein kinase domain 669 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1435 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Vra10g1435 968 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Vra10g1435 968 ProSiteProfiles Protein kinase domain profile. 666 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1435 968 SMART LRR_sd22_2 97 120 - -
Vra10g1435 968 SMART LRR_sd22_2 266 294 - -
Vra10g1435 968 SMART LRR_sd22_2 313 345 - -
Vra10g1435 968 SMART LRR_sd22_2 169 189 - -
Vra10g1435 968 SUPERFAMILY RNI-like 77 399 - -
Vra10g1435 968 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vra10g1435 968 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Vra10g1435 968 SMART LRR_typ_2 289 312 IPR003591 -
Vra10g1435 968 SMART LRR_typ_2 218 242 IPR003591 -
Vra10g1435 968 SMART LRR_typ_2 313 337 IPR003591 -
Vra10g1435 968 SMART LRR_typ_2 529 553 IPR003591 -
Vra10g1435 968 SMART LRR_typ_2 481 504 IPR003591 -
Vra10g1435 968 SMART LRR_typ_2 169 194 IPR003591 -
Vra10g1435 968 SMART LRR_typ_2 97 121 IPR003591 -
Vra10g1435 968 SMART LRR_typ_2 122 144 IPR003591 -
Vra10g1435 968 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 17 961 - -
Vra10g1435 968 SUPERFAMILY Protein kinase-like (PK-like) 652 952 IPR011009 -
Vra10g1435 968 Gene3D Phosphorylase Kinase; domain 1 649 757 - -
Vra10g1435 968 Pfam Leucine rich repeat 507 565 IPR001611 GO:0005515
Vra10g1435 968 Gene3D Ribonuclease Inhibitor 288 607 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1435 Vra-Chr10 19413155 19416650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1435 18 968 Receptor kinase-like Gene Family AT1G09970 56.621 0.0 1051
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra10g1435 Pkinase 8.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1435 - - ccaj:109814095 1607.81