Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1424 ATGTCTACAAAAATGAAGCCTACCTCAAGAAATTATTATCCTCTTGTTTTCTTTGGGTCATTATTCTGTCTCTTTATGGCCAGATTTGGTGCTGAAAGTGACATCTATTGCTTGCAAACCATCAAGAACATGGACACTTCTGATCTCTTATCTAGCTGGGATTTCGAGAGCAACACTGAGCGTGGCATATGCAGATTTAGCGGTGTTGAATGCGGCAACAACTATGTGGAAGATAGAGTAATCAGTCTATGGCTATCTAACATGGGGCTGAAAGGCCAGTTTCCTCGTTGCATCGAAGATTTCACATGGTTGCAGACTCTGATCCTCTCACACAACGAGCTTTCTGGATATATCCCAAACGATATATCAGCCAAGCTGCCATATCTGACCACACTTGATCTCTCAAATAACTATTTCTCTGGTGAAATTCCAAAGGGTATTGCCAATTTGTCAGGCTTAATTACCCTTCTACTTGATGGCAACCAGTTAACAGGCCAAATCCCACAAGATCTTGGGTTGCTTCCCAGGTTGAGAGATTTCAGTGTTGCAAATAACTTGTTGGAAGGGTCAGTGCCTGTTTTTGTGAGCAATCTTGATGTGAGTTTGAGCTATGCAAATAACAGTGGACTCTGTGGGGGAATACTAGGAAACTGTGATGAGAGCTTGTTTGGTAGATCGTTCTGGTATAGTTTTATTATTGGTTTTGCTTGCTCAGCTACTTCTGTTCTAGCATCTTTCATGTACTATTATGCACCTTGGACAGAATTCAAAAAGAGGAGGAGTAACGCTATTCATCCCCTAGTCAAGAAGCAGAATACTGAACAAGAACTGGTCTTTCATGAGCAAGGAAGCAAAGAGCTATCAATATTGTTGGAGAGATTTATTACTAGAATGAGCTTCGAGGGATTATGCAAGGCAACAGATTACTTTTGCATTGATAACGTGTTGGGGATAGGAAAGACAGGGATTATGTACAAGGCAAAGGTATCAAATAGCTGTTTTCTGGCAGTTAAGAGACTGTATGATGCTGATAAGTACAAGTGGAAATTCTTACTTGAAATAATGATTCCGGGAAGACATAGGCACAGAAACATAGTTCTACTGCATGGATTCTGCATACAGAAACATGAAAGGATTTTGGTGTATAAGTACATTTCTAATGGTCGACTCAGTGATTGGTTAGAATCTGACGAGGGACATCAACCAACAAAATTAGAATGGCCCGAGAGGATTCACATTGCACTTGGGATTGCAAGAGGTTTATCTTGGCTCCACAAAAGGTGCAACATAGTTCACCTCAATTTAGATTCAGAGTGTGTCTTGCTGGACAAGAACTTCGAGCCAAAAATTTCGAATTTTGGCAAGGCGAAATTCCTAAACCAGACTGTTGAAGATCATGTGAGGATGAAATTGTTTTTGGTTGATGGACTTGGAGTGAAGGGTAATGCTGAGAAGGATGTCTATGATTTTGGAATAATCCTTTTTGAGCTTTTAACGGGGAAAAGACTAAGTCCATCGACTGATTCTTCTGACAGTATTAATGGCCATATGATGAAGTATATCAGTAAGAACTTGTTCACTGATCCTGCTGACTTTTATGATGCCATTGACGATTCTATAATGGGGAAGGGTTTTGATGATAAAATCCTACGTCTTCTTGAAGTTGCATGTGACTGTGTTAAGACATCTCTAAAGCAAAGGCCAAAGATGATTGATATTCACCACACTCTAAGAGCTATGTGGGAGGGCTATAAACCCTGCTTTCATTATGAAAGTCTGAAACTGTCTATGGATTGTGCTGACTATATAAAGTGTATCAGCCAAATTGAATGTATTGAATAG 1842 0.399 MSTKMKPTSRNYYPLVFFGSLFCLFMARFGAESDIYCLQTIKNMDTSDLLSSWDFESNTERGICRFSGVECGNNYVEDRVISLWLSNMGLKGQFPRCIEDFTWLQTLILSHNELSGYIPNDISAKLPYLTTLDLSNNYFSGEIPKGIANLSGLITLLLDGNQLTGQIPQDLGLLPRLRDFSVANNLLEGSVPVFVSNLDVSLSYANNSGLCGGILGNCDESLFGRSFWYSFIIGFACSATSVLASFMYYYAPWTEFKKRRSNAIHPLVKKQNTEQELVFHEQGSKELSILLERFITRMSFEGLCKATDYFCIDNVLGIGKTGIMYKAKVSNSCFLAVKRLYDADKYKWKFLLEIMIPGRHRHRNIVLLHGFCIQKHERILVYKYISNGRLSDWLESDEGHQPTKLEWPERIHIALGIARGLSWLHKRCNIVHLNLDSECVLLDKNFEPKISNFGKAKFLNQTVEDHVRMKLFLVDGLGVKGNAEKDVYDFGIILFELLTGKRLSPSTDSSDSINGHMMKYISKNLFTDPADFYDAIDDSIMGKGFDDKILRLLEVACDCVKTSLKQRPKMIDIHHTLRAMWEGYKPCFHYESLKLSMDCADYIKCISQIECIE* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1424 613 Gene3D Ribonuclease Inhibitor 37 219 IPR032675 -
Vra10g1424 613 SUPERFAMILY Protein kinase-like (PK-like) 287 586 IPR011009 -
Vra10g1424 613 SUPERFAMILY L domain-like 61 222 - -
Vra10g1424 613 Gene3D Transferase(Phosphotransferase) domain 1 385 589 - -
Vra10g1424 613 ProSiteProfiles Protein kinase domain profile. 310 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1424 613 PANTHER RECEPTOR-LIKE PROTEIN 55 16 580 - -
Vra10g1424 613 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 16 580 - -
Vra10g1424 613 Pfam Protein kinase domain 313 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1424 613 Gene3D Phosphorylase Kinase; domain 1 270 384 - -
Vra10g1424 613 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1424 Vra-Chr10 19342215 19344583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1424 10 582 Receptor kinase-like Gene Family AT3G28450 34.286 9.20e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vra10g1424 Pkinase 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1424 - - gmx:106795644 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1583 7 34140944 34153324 Vra10g1424 10 19342215 19344583 PCT