Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1421 ATGAGTAACAGTGATTGGGTGTTAGATTATGATTATCTAGACAGCATTTCTTTCCCCACTCTTCATCCACCCAATTTCTCTTGGTCTTCTTCCTCTCCTCCTACAACCTTCAGTGCGGACGTAGATGACCCATTGGGAATTTCGGATGGTTTCAAGGAAAACGGGTCAAAGAAACGTCTGAGGTCACCTGGTTCCAAAGCATGTAAAGAGAAAATGAGAAGGGATAGACTCAATGACAGGTTTTTGGAACTGGGGTCTGTCCTGGACCCTGCAAGGCCTCTCAAAATGGAAAAGGCTGTTATATTGAGTGATGCAGTTCGAACGGTGTCTCAGTTACGAGAGGAAGCTCAGAAGCTACGAGAGTGCATTAAGAGTTTACAAGGGAAAATCAATGAATTGAAGGCTGAGAAGAATGAGCTTCGTGAGGAGAAGCAGCAACTAAAAACAGAAAAAGATAACCTTGAGCAGAAGATTGAGGCCTTTAAGTCACAACCTAGCTTTCTTTCTGCAGTTCCTGCACCAGGACAAGTTGTTGGTAGAAAGTTGGTGCCCTTCATGGGCTACCCAGGAGTTGCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGACACCTCACAGGACCATGTACTCCGGCCACCGGTTGCATAA 648 0.4568 MSNSDWVLDYDYLDSISFPTLHPPNFSWSSSSPPTTFSADVDDPLGISDGFKENGSKKRLRSPGSKACKEKMRRDRLNDRFLELGSVLDPARPLKMEKAVILSDAVRTVSQLREEAQKLRECIKSLQGKINELKAEKNELREEKQQLKTEKDNLEQKIEAFKSQPSFLSAVPAPGQVVGRKLVPFMGYPGVAMWQFLPPAAVDTSQDHVLRPPVA* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1421 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Vra10g1421 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 140 IPR036638 GO:0046983
Vra10g1421 215 CDD bHLH_AtILR3_like 66 141 - -
Vra10g1421 215 Coils Coil 102 164 - -
Vra10g1421 215 SMART finulus 67 118 IPR011598 GO:0046983
Vra10g1421 215 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Vra10g1421 215 Gene3D - 65 140 IPR036638 GO:0046983
Vra10g1421 215 MobiDBLite consensus disorder prediction 39 71 - -
Vra10g1421 215 PANTHER BHLH TRANSCRIPTION FACTOR 3 215 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Vra10g1421 215 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 3 215 - -
Vra10g1421 215 MobiDBLite consensus disorder prediction 52 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1421 Vra-Chr10 19323647 19326296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1421 3 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 56.087 1.16e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra10g1421 HLH 5.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1421 - - gmx:100790993 317.005